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BigDataBiology
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SemiBin
SemiBin: metagenomics binning with self-supervised deep learning
https://semibin.rtfd.io/
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ValueError: num_samples should be a positive integer value, but got num_samples=0
#177
francesco-ricci
opened
2 weeks ago
1
DAS Tool
#176
francesco-ricci
closed
2 weeks ago
2
Warnings when binning using long reads.
#175
123chenshixin
opened
4 weeks ago
0
KeyError(f"None of [{key}] are in the [{axis_name}]") using aemb
#174
michoug
opened
1 month ago
3
Number of bins prior to reclustering: 0
#173
yazhinia
opened
1 month ago
0
Error: provided pretrained model only used in single-sample binning!
#172
yazhinia
opened
1 month ago
3
Large memory requirements (for very large binning jobs)
#171
luispedro
opened
1 month ago
0
Error: Running hmmsearch fail
#170
StickHu
opened
2 months ago
2
How to run "generate_sequence_features_single" with UNSORTED bam
#169
GuoYang-qd
opened
2 months ago
2
KeyError when generating coverage
#168
Louis-MG
closed
2 months ago
3
Question: Coverage not calculated for single_easy_bin with less than 5 .bam files
#167
Sebastien-Raguideau
opened
2 months ago
2
SemiBin2 fails to generate bins for large assemblies
#166
apcamargo
closed
2 months ago
3
numpy.core._exceptions._ArrayMemoryError: Unable to allocate 2.86 TiB for an array with shape (886662, 886662) and data type float32
#165
lfdelzam
opened
3 months ago
0
Training step problem
#164
heavennew
opened
4 months ago
2
Only 2 contigs contain 1000 basepairs
#163
timternetnet
closed
5 months ago
3
Extract then merge
#162
alienzj
opened
5 months ago
9
bam files from bowtie2 or strobealign
#161
microsud
closed
6 months ago
2
removed
#160
eperezv
closed
6 months ago
0
Error when running SemiBin2 (normalization?)
#159
eperezv
opened
7 months ago
6
Accept CRAM files instead of BAM
#158
fplazaonate
closed
7 months ago
3
Some clarification about the data.csv and data_split.csv content
#157
kafker
closed
7 months ago
1
special character in sample names
#156
gjordaopiedade
closed
7 months ago
1
Too many open files
#155
susheelbhanu
closed
6 months ago
11
Empty data.csv file and IndexError with SemiBin2
#154
AAwan2
closed
7 months ago
6
Changing default compression from none to gzip will cause DAS tool to fail
#153
ElderMedic
closed
7 months ago
3
Retain sample contig names during generate_sequence_features_multi
#152
adityabandla
opened
7 months ago
0
KeyError: '40075' Easy coassembly binning mode
#151
gabrieleghiotto
opened
8 months ago
2
SemiBin doesnt complete bining. Seems to be stuck
#150
HitMonk
opened
8 months ago
4
Multi-binning got KeyError
#149
chenjh356
closed
7 months ago
6
Add option to bypass coverage calculation
#148
fplazaonate
closed
8 months ago
9
Empty test cases
#147
Ralwoss
opened
11 months ago
0
Clarification on concatenate_fasta Dereplication Process
#146
vsanchez0
closed
11 months ago
2
Replicability of semibin2 single_easy_bin
#145
FelipeMSD
closed
1 year ago
2
Multi-sample approach and bowtie2-build
#144
FelipeMSD
closed
1 year ago
11
Error: SemiBin concatenate_fasta
#143
FelipeMSD
closed
1 year ago
4
Parallel binning
#142
FelipeMSD
closed
1 year ago
2
Database Download & Documentation
#141
gbouras13
opened
1 year ago
1
Semibin not respecting `-p` threads argument
#140
AroneyS
opened
1 year ago
1
ValueError: num_samples should be a positive integer value, but got num_samples=0
#139
ZarulHanifah
closed
11 months ago
2
Long_read problem
#138
ZarulHanifah
opened
1 year ago
1
SemiBin crashes when the last batch has only one element
#137
fplazaonate
closed
1 year ago
2
Specifiy the numpy version
#136
shenwei356
closed
1 year ago
5
Cannot run on CAMI Skin / VAMB
#135
richardlett
closed
1 year ago
3
Bug fix samtools error when testing
#134
psj1997
closed
1 year ago
0
KeyError
#133
Sumsarium
closed
11 months ago
6
abundance analysis of bin
#132
nashanghenzan
closed
1 year ago
2
Running `bedtools genomecov` failed
#131
nashanghenzan
closed
1 year ago
3
Failing to index concatenated fasta
#130
x-rv
closed
1 year ago
1
Error running single_easy_bin on coassembly
#129
heleeno
closed
1 year ago
2
Error using multi_easy_bin with --no-recluster
#128
Ralwoss
closed
11 months ago
8
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