EddyRivasLab easel issues

EddyRivasLab / easel

Sequence analysis library used by Eddy/Rivas lab code

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issues

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Optimizing esl-translate for genomes where alternative start sites and/or unusual codon usage is common?

#77 000generic opened 2 months ago
3
esl-shuffle silently fails to shuffle large sequences

#76 rmhubley opened 2 months ago
0
Fix faulty `xr_tag` allocation in `esl_sq_Copy`

#75 althonos closed 4 months ago
1
fix typos

#74 mr-c closed 9 months ago
1
propogate CPPFLAGS

#73 mr-c closed 9 months ago
1
HMMER-make check fail

#72 VimaxXAAS closed 10 months ago
11
CT to WUSS format convertion

#71 mkazanov closed 12 months ago
3
Additions to support hmmsearcht PR in HMMER

#70 traviswheeler closed 10 months ago
1
A cryptic error message: "external sort of primary keys failed"

#69 Khalimat closed 1 year ago
4
`esl_sq_Copy` doesn't copy `tax_id` attribute

#68 valentynbez closed 1 year ago
2
primary keys not unique: 'AABF01000026.1/2165-2294' occurs more than once

#67 arslan9732 closed 1 year ago
10
Bug fix; adds boundary check for ascii->buf in skip_whitespace()

#66 nawrockie closed 1 year ago
3
Error in extracting the hmmsearch hits by esl-sfetch -f

#65 GokilavaniThangavel closed 1 year ago
1
issue while installing HMMER

#64 mohankrishnas777 closed 1 year ago
2
algs needed for new profmark

#63 spetti closed 2 years ago
1
Add some compatibility code for compiling with MinGW

#62 althonos closed 2 years ago
0
Fix inconsistent `esl_sqfile_GuessAlphabet` behaviour on file with empty sequences

#61 althonos closed 2 years ago
1
Fix inconsistent `esl_sqfile_GuessAlphabet` behaviour on file with empty sequences

#60 althonos closed 2 years ago
0
Use intrinsic for `esl_sse_select_ps` if compiling for SSE4

#59 althonos closed 3 years ago
0
esl_mixdchlet-utest fails when compiled with --enable-debugging=3

#58 npcarter closed 3 years ago
2
Add horizontal sum of float32x4 NEON vector

#57 althonos closed 3 years ago
7
Intermittent crash during Stockholm MSA Read (with possible fix)

#56 andycowie closed 3 years ago
2
Fix unitialized `abc` pointer in `ESL_SQ` struct

#55 althonos closed 3 years ago
1
Independent set algorithms for benchmarking splitting algorithms

#54 spetti closed 2 years ago
1
Set tmp directory for esl-sfetch

#53 arglog closed 3 years ago
2
Fix hmmer make check after configure --with-gsl

#52 kiwiroy closed 3 years ago
1
Is eslREADBUFSIZE = 4096 optimal?

#51 Augustin-Zidek closed 3 years ago
3
How to cite miniapps

#50 ms-gx closed 3 years ago
1
HMMER esl-fetch corrupt coords

#49 3719left closed 3 years ago
0
Fix ReadBlock()'s handling of "//" delimiter in embl files

#48 traviswheeler closed 3 years ago
0
esl_sqio_ascii rare bug: final record line longer than all previous does not invalidate fast subseq retrieval

#47 nawrockie closed 3 years ago
2
esl_sqio_ReadBlock max init window flag

#46 nawrockie closed 4 years ago
0
Enforces if(foo) before free(foo) in esl _Destroy() functions

#45 nawrockie closed 4 years ago
2
Goes over all _Destroy() functions and enforces convention that if(foo) is called before free(foo)

#44 nawrockie closed 4 years ago
0
Enable position independent code compilation, via --enable-pic configure option

#43 nawrockie closed 4 years ago
0
esl-reformat mixed gaps error

#42 marceloqla closed 4 years ago
1
esl_fprintf and similar functions

#41 horta closed 3 years ago
1
Read-only go for DisplayHelp

#40 horta closed 5 years ago
0
const buff

#39 horta closed 5 years ago
0
Not allowed to change string on esl_[banner|usage]

#38 horta closed 5 years ago
0
alphabet dump

#37 horta closed 5 years ago
2
Markdown documentation

#36 horta closed 5 years ago
1
Code format

#35 horta closed 5 years ago
3
Dumping functions

#34 horta closed 5 years ago
1
Information for developers - thanks to @npcarter

#33 horta closed 5 years ago
2
Fix leak on test

#32 horta closed 5 years ago
1
Hopefully simpler ppc32 and macos test

#31 horta closed 5 years ago
4
PPC fix, IEEE comparison check, isnanf check, travis test/badge

#30 horta closed 5 years ago
6
Prepend sequence index if names non-unique in aligned fasta format

#29 potter-s opened 5 years ago
0
Errors when compiling: ‘_mm_max_epi8’: target specific option mismatch

#28 bioinformatist closed 5 years ago
5