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I am attempting to replicate the results from ShinyGo, but for a specific gene set pathway. I am interested in mmu05012, parkinsons disease, and I have 266 genes correlated with it. I want to check wh…
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Hi,
Your tool is excellent, however, over representation analysis is very slow for GO compare to other terms (KEGG, DOSE). I think it might have to do with the amount of GO data.
I hope the perf…
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During our meeting we discussed the changes that had been made to our site and our code over the course of the week, Rachel and Caroline had met with Dr. Birnbaum for a few hours to re-tokenize our ma…
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When including geometries, osm-wayback is basically a **history-enabled** version of `minjur` or `osmium-export`. (Trading +history for -intelligence and -speed)
That said, a simple representation…
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Implement [Andersen's algorithm for points-to analysis](http://www.cs.cornell.edu/courses/cs711/2005fa/papers/andersen-thesis94.pdf).
This implementation has several phases/versions (perhaps abstra…
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# DIMEdb Roadmap November 2017
A summary of our plans and goals.
- [ ] Version 1.0 of the database to be finalised.
- [x] JCAMP and TSV export of data from metabolite page
- [ ] JCAMP dumps of t…
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I'm a little confused. Isn't that what we're doing / what I'm proposing? We construct the `Peak Group Conflicts` sheet including the existing DB records, for the researcher to select t…
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## Background
The Edge-Deletion Analyzer originally developed in #77 was generalized in #79 to check the results of `K_{2, 3}` search, `K_{3, 3}` search, or `K_4` search to see if, for each `.g6`-e…
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Dear All,
I had two questions concerning enrichment analysis and permulations.
1) With the function "fastwilcoxGMTall", is it correct to use a list of goterms and associated genes instead of pa…
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The following await decision making once a first-pass attempt has been given.
* Labels for systematics & collections.
* Photo measurement correction (from coins, scales, etc...).
* Extract size o…