Princeton-LSI-ResearchComputing tracebase issues

Princeton-LSI-ResearchComputing / tracebase

Mouse Metabolite Tracing Data Repository for the Rabinowitz Lab

MIT License

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issues

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Added Peak Annotations sheets to the build a submission page output and made fixes to bugs relating to pandas behavior WRT empty cells

#1018 hepcat72 opened 6 days ago
0
Added Tracers and Infusates sheets to the build a submission output

#1017 hepcat72 opened 6 days ago
0
Add a study sheet to the returned "build a submission" doc

#1016 hepcat72 opened 6 days ago
0
`DataValidationView` (the `Build a Submission` view) Refactor

#1015 hepcat72 opened 6 days ago
0
`ExcelWriter` should be used as a context manager

#1014 hepcat72 opened 1 week ago
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`StudyLoader` for submission refactor

#1013 hepcat72 opened 1 week ago
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`PeakAnnotationFilesLoader`

#1012 hepcat72 opened 1 week ago
0
Samples and Animals Loader fixes

#1011 hepcat72 opened 1 week ago
1
Infusate parsing updates for intersheet relations in `StudyLoader`

#1010 hepcat72 opened 1 week ago
0
Exception packaging improvements for `StudyLoader`

#1009 hepcat72 opened 1 week ago
0
`TableLoader` updates for the submission refactor

#1008 hepcat72 opened 1 week ago
0
Study rebase clean-up

#1007 hepcat72 opened 1 week ago
0
Study rebase

#1006 hepcat72 opened 1 week ago
0
`load_samples.py`

#1005 hepcat72 opened 1 week ago
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`SamplesLoader`

#1004 hepcat72 opened 2 weeks ago
0
Use `*` to require 0 positional args in `TableLoader`

#1003 hepcat72 opened 2 weeks ago
0
Do not raise `DryRun` exceptions from the command scripts

#1002 hepcat72 opened 2 weeks ago
0
`load_animals.py`

#1001 hepcat72 opened 2 weeks ago
0
Animals Loader

#1000 hepcat72 opened 2 weeks ago
2
PeakAnnotationsLoader 8 - The load script

#999 hepcat72 opened 2 weeks ago
0
PeakAnnotationsLoader 7 - The actual class and its derived classes

#998 hepcat72 opened 2 weeks ago
0
PeakAnnotationsLoader 6 - `MissingCompounds` and Misc edits

#997 hepcat72 opened 2 weeks ago
0
PeakAnnotationsLoader 5 - Model `get_or_create` methods

#996 hepcat72 opened 2 weeks ago
0
PeakAnnotationsLoader 4 - Isotope Label Parsing

#995 hepcat72 opened 2 weeks ago
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PeakAnnotationsLoader 3 - ConvertedTableLoader

#994 hepcat72 opened 2 weeks ago
0
PeakAnnotationsLoader 2 - MSRunsLoader updates

#993 hepcat72 closed 1 week ago
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PeakAnnotationsLoader 1 - Necessary changes to TableLoader base class

#992 hepcat72 closed 2 weeks ago
1
Match mzXML files that use dashes (`-`)

#991 lparsons opened 3 weeks ago
2
Attempted rollback of ArchiveFile operations results in Exception

#990 lparsons opened 3 weeks ago
0
Parsing of `mzXML` files with zero (`0`) scans fails, raising a `MzxmlParseError: 'scan'`

#989 lparsons opened 3 weeks ago
0
Disabled caching updates in the msruns loader

#988 hepcat72 closed 3 weeks ago
0
Disable caching during maintained field rebuild

#987 hepcat72 closed 3 weeks ago
0
Gracefully handle stale maintained `Animal.last_serum_sample` maintained field

#986 hepcat72 closed 3 weeks ago
1
Advanced Search exception

#985 hepcat72 closed 3 weeks ago
3
Treatments Column Overrun on Studies page

#984 hepcat72 opened 1 month ago
0
Msruns loader rollback cleanup

#983 hepcat72 closed 3 weeks ago
0
Added the ability for ArchiveFile to clean up the archive after the commit of a delete.

#982 hepcat72 closed 3 weeks ago
0
Improvements to settings for testing the archive directory.

#981 hepcat72 closed 3 weeks ago
1
Improvements to MSRunsLoader.get_msrun_sequence.

#980 hepcat72 closed 3 weeks ago
0
Clean up archive files stored to disk during an atomic transaction that rolls back

#979 hepcat72 closed 1 month ago
1
Added rownum to `TableLoader.__init__`

#978 hepcat72 closed 1 month ago
0
Exceptions in `TableLoader` related to `--infile` location metadata when `MSRunsLoader` loads without an infile

#977 hepcat72 closed 1 month ago
0
Catch missing sequence issues before ArchiveFile records created

#976 hepcat72 closed 3 weeks ago
3
Save the mzXML file in the archive, duh

#975 hepcat72 closed 1 month ago
2
chore: cleanup duplicate peakgroup records from tracebase-dev

#974 lparsons opened 1 month ago
0
Issue 954 isoautocorr support

#973 lparsons closed 3 weeks ago
0
Include `pylint-django` in the CONTRIB doc and dev requirements?

#972 hepcat72 opened 1 month ago
0
Stubbed out the PeakAnnotationsLoader class with derived classes for file format conversion

#971 hepcat72 closed 2 weeks ago
4
Trivial comment fixes

#970 hepcat72 closed 1 month ago
0
Investigate calculations related to multiple Peak Group representations WRT mzXML files

#969 hepcat72 opened 1 month ago
0