-
Hi Mchaisso
phasedSV is very useful, but when I was trying to install phasedSV, I encountered many missing libraries, if you can provide a docker image will be very helpful!
thank you!
Jeff C …
-
### Description of feature
Include alignment subworkflow for ULI reads. Might need a way to import the ULI flag.
-
-
`chr5 20023782 Minda_110 N N]chr5:155777976] . PASS SVLEN=135754194;SVTYPE=BND;SUPP_VEC=ILL_MantaBND:95378:0:1:1:0:0:0,ILL_gridss90bb_818h,PB_r_282_1,ONT_r_180_1,PB_severus_INV5636,ONT_severus_INV6501…
-
Hello @giovanniquinones,
I have been trying isoLASER out but I'm failing to generate the output pickle files from:
`isolaser_extract_exonic_parts -g {annot.gtf} -o {transcript.db}`
For the ann…
-
Hello dear developers,
I will try PECAT for the first time for a diploid genome of about 500Mb and I am writing to ask for script recommendations. There are some template cfgfile files for some spe…
-
Hello,
I am currently trying to run finder on three whole genome samples:
1. Sequenced with Illumina HiSeq x ten
2. Sequenced with Illumina Novaseq 6000
3. Sequenced with PacBio SMRT
Samples…
-
Hello All!
Im working with PacBio reads for the very first time. Compared to the tutorial, Im see im loosing really large number of reads. Below is the table:
Sample | ccs | primers | filtered…
-
Have you missed me? Trying to run PacBio data through and getting the following error with quality_profile_pairs.
```
> qpp %
dadautils::write_QPP(file.path(CFG$output_path, "qpp"))
Error:…
-
We're just getting in our first standard 16S data from the PacBio Revio which is using the [Kinnex kit](https://www.pacb.com/technology/kinnex/), and will soon be getting 16S-ITS-23S data. I know the…