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In https://github.com/monarch-initiative/semsimian/issues/82#issuecomment-1658950359
@caufieldjh showed us that HP:phenotypic abnormality is very different parents than MP:phenotypic abnormality.
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While working on test data, I found that when `fcqs` is run on the real data from the Dropbox, it results in complex eigenvalues in `rigpower`, resulting in an error in `eval`.
This is the code I r…
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Create a standalone page for phenotypic data, with the intent to describe the experiment and provide the non-omic data.
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### Is there an existing issue for this?
- [x] I have searched the existing issues
### Expected Behavior
_No response_
### Current Behavior
When submitting any cohort query to an n-API v0.4.0
- i…
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BrAPI manage phenotypic data well on the single observation level (e.g. single measurements on one plot). In the breeding process, be means of a statistical analysis, most often a ANOVA (Analysis of v…
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https://figshare.com/articles/dataset/International_Journal_of_Systematic_and_Evolutionary_Microbiology_IJSEM_phenotypic_database/4272392?file=6994457
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**Submitting author:** @DamianJM (Damian John Magill)
**Repository:** https://github.com/DamianJM/T-REX
**Branch with paper.md** (empty if default branch): main
**Version:** v1.2
**Editor:** Pending
*…
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I tried to plot phenotypic comparison using these lines:
hpo.plot(
patient = patients['ORPHA:104']['cohort'][0]['phenotype'],
disease = {
'name': patients['ORPHA:104']['name'],
…
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I am a researcher in plant genetics, currently endeavoring to understand the correlation between specific loci and phenotypic traits in plants. In my research, I have collected data on a series of loc…
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Hi,
Thank you for developing this tool.
I am using the local genetic correlation section of the tool (rho-HESS) and have a question regarding accounting for phenotypic correlation which is require…