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Requirements: include LA phenotyping procotol information
https://dev.mousephenotype.org/understand/the-data/phenotyping-process-impress/
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Hello!
I am running 4_Post_Clustering, and when importing packages, I was unable to import 'ark.phenotyping.post_cluster_utils.generate_new_cluster_resoltuion'. I was looking at the documentation for…
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While assigning phenotype names in the multi-axial gating, if a name includes a '-' or '_' then when importing the multi-axial gating into phenotyping, the phenotyper throws an error. Need to work on …
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When I was working on my plant phenotyping Capstone project for MarsFarm, when I was trying to calculate rois automatically for a diverse set of images I developed a program to automatically calculate…
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https://jira.fsm.northwestern.edu/browse/RW-5513
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Expected Behavior
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and fix other issues.
For Bugs:
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### Environment
#### Steps to Reproduce
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- [x] I think it would be nice to have the option to either select a project but also have an `All projects` option.
- [ ] We could make it optional that you can have a little project description in…
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I get the following output when from the lidc_data_to_nifti script. (from line 86). I do not see where I am going wrong...
```
/home/eloy/Desktop/LUNG_DATA/Phenotyping/MITK-2016.11.99_r5cccf9-lin…
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In the documentation of the mandatory phenotyping protocol there is only a Parameter [TDF], which can be moved to the investigation file as @proccaserra suggested in #7 and a Parameter [Observation Le…
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Good afternoon,
I wanted to ask are phenoptr reports only for merging cell segmentation data after phenotyping or can I use phenoptr reports for data analysis for object segmentation?
In object…