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salut, j'essaie de rouler phylophlan sur les noeuds et j'y arrive pas
avec ce script :
`/home/def-ilafores/analysis/boreal_moss/Phylogeny/phylophlan_slurm.sh
`
J'ai essayé avec et sans anchor en s…
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I've uploaded the file 'CommunityMat' that works as a community matrix for the animals. Together with the nwk file from TimeTree, I'm able to calculate the phylogenetic diversity for the animals with …
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See also issue #228 ...
@MoralesCastilla Will make some notes on where we're at.
**Few notes from Lizzie:**
Jonathan still thinks if you have common species you can just prune the Zanne tree publ…
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sorry not yet discussed but:
- [ ] construct viral phlyogeny
- [ ] explore viral community phylogeny for signs of over/underdispersion (null models).
- [ ] match phlyogenetic signals to bacteria…
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Hello,
We recently used TreeTime to infer ancestral sequences for a set of Influenza samples and then visualized the phylogenetic tree with the branches being annotated by the inferred mutations.
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rvosa updated
8 years ago
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rvosa updated
8 years ago
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Tree: https://github.com/naturalis/RiseAndFall/blob/master/tree_inference/results/mammals/mammals_phylogeny/mammals_phylogeny_corrected_iucn.nex
Internal phylogeny of Otaridae is off.
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Tree: https://github.com/naturalis/RiseAndFall/blob/master/tree_inference/results/mammals/mammals_phylogeny/mammals_phylogeny_corrected_iucn.nex
Internal phylogeny of Mephetidae seems weird.