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Hi,
Thanks for developing metawrap!
I am attempting to annotate the reassemble bins with prokka, however I am getting the following error message:
> Please rename your contigs or use --centre XX…
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Hi there,
Can you please tell me how I can pass options to the `prokka` command inside `SASpector`? I am particularly interested in how to change the `gcode` annotation option to something other t…
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This is a suggestion.
metawrap-mg is totally outdated. Moreover, all of dependencies can actually work with python 3 without revising module scripts of metawrap.
Prepare a cleaner conda enviro…
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### Description of feature
Also recommended by Prokka developer! nf-core module already exists
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Hello,
I was attempting BACTpipe runs on ctmr-gandalf with a test set of 2 isolate pe-fastq samples when unexpectedly the system encountered an error during the Prokka module. The Git Repo was pull…
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Hello,
Just wondering why not using bakta instead of prokka. And in the same time why not use pyrodigal instead of prodigal?
Don't know if it could be useful to switch to these software instead of t…
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It shows following error but it seems I have 'hmmer' in my system.
error:
Failed to load module Bio::SearchIO::hmmer3. Can't locate Bio/SearchIO/hmmer3.pm in @INC (you may need to install the Bi…
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I'm trying to use this command line to annotate several genomes in FASTA format that exist in a directory, but the problem is that it only annotates one genome
command line: prokka allgenomes/*.fn…
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Hello,
I ran the perl script. The script runs till the following message is displayed:
Reported 91 pairwise alignments, 100 HSSPs
91 queries aligned.
#3
and terminates
I can't locate my out…
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The gff files I'm seeing contain multiple hits to the same gene, and I'm trying to figure out if they are actual gene duplications or if they are duplicates because of assembly/read issues. For examp…