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Allow promoters to select locations pre existing within the system
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Hi,
I am running breseq to identify mutations in E. coli samples and I've noticed that a few times mutations appear where in the gene_name column I have something with the format gene1|gene2. I could…
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not an issue but a general inquiry. Can one use `clusterBidirectionally` to map bidirectional promoters? bidirectional promoters are classically defined as 1kb regions between 2 opposite TSSs(+ and - …
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A long-term optimization for the image-promoter is to switch the image to distroless. That means that everything has to be implemented in Go but we are making various `os.exec` calls in the code.
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As noted by @mhvk [here](https://github.com/numpy/numpy/pull/26102#discussion_r1534636116), the order that promoters get added matters, and it shouldn't.
Taking a look at the promoter resolution al…
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Hi again,
While investigating the `proActiv` results for my sample dataset I came across the fact that many genes do not have a "Major" promoter, yet they tend to have multiple Minor promoters.
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Dear Team,
First, thanks for all your efforts - in particular for encapsulating in goldmine and abbreviating what has been many a previous effort in mapping DM results to a RefSeq genome.
Please…
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Dear Malte,
when running the following code
`TSSs_quick
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Accession: SO:0001668
Synonym: (add) promoter proximal region
Def: DNA segment that ranges from about -250 to -40 relative to +1 of RNA transcription start site, where sequence specific DNA-binding tr…
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I was trying to calculate the promoter ratio and I noticed that features can be counted twice if more than one promoter fall into the overlap. I was getting promoter ratios of over 1 which doesn't mak…