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e.g. large protein families
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https://doi.org/10.1101/103994
> As high-throughput biological sequencing becomes faster and cheaper, the need to extract useful information from sequencing becomes ever more paramount, often limit…
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Thanks for the really nice package!
A question (rather than an issue): is there any official trained model and where does it exist in package? Thank U :)
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Hi!
I'm having some trouble understanding where this can come from.
I tried to align a sequence with HMMER and filter on the e-value at 1e-05.
With HMMER, I have this result in the domtblout:
```
…
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[2024-10-28 04:01:14] INFO: GTDB-Tk v2.4.0
[2024-10-28 04:01:14] INFO: gtdbtk classify_wf --genome_dir new_genome_data/ --skip_ani_screen --out_dir classify_wf_out --cpus 16
[2024-10-28 04:01:14] IN…
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Can different lengths of bp correspond to different information received about protein families?
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Hi Kaiyi and other authors,
Congratulations on this paper! The results look very promising, and I cannot wait to apply it to my project.
As I just started to run these codes.
In the extract.…
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As the paper `Protein−Ligand Scoring with Convolutional Neural Networks` says: `The performance of trained CNN models were evaluated by 3-fold cross-validation for both the pose prediction and virtual…
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Hi, thank you for your supports before. I used for my viral protein, but from the "_predictions.csv" only 3,021 protein was annotation (all 109,221 viral protein), and for this 3,021 result 60% is "un…
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sometimes, you'll find that tracks in an alignment differ at a certain position with respect to the gene family assigned for the gene in that position (ie the "color" alternates between a few choices)…