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ben-silke
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biol3209
This repo contains the code for the undertaking of the biol3209 subject.
BSD 3-Clause "New" or "Revised" License
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Sourcery refactored main branch
#55
sourcery-ai[bot]
opened
7 months ago
0
Develop
#54
ben-silke
opened
1 year ago
0
Develop to main
#53
ben-silke
closed
1 year ago
0
Gene prediction similarity
#52
ben-silke
opened
1 year ago
0
Results graph gen should be scripts
#51
ben-silke
opened
1 year ago
0
Paper shown yesterday in lab meeting about gene content of environments
#50
ben-silke
closed
1 year ago
1
Delete data directory
#49
ben-silke
opened
1 year ago
0
Delete data/soil/soil_reference_genomes directory
#48
ben-silke
closed
1 year ago
0
Develop
#47
ben-silke
closed
1 year ago
0
Prodigal + GeneMark2S testing
#46
ben-silke
opened
1 year ago
2
JustOrthologs testing
#45
ben-silke
opened
1 year ago
2
Presentation Plan
#44
ben-silke
opened
1 year ago
1
Develop
#43
ben-silke
closed
1 year ago
0
papers
#42
ben-silke
opened
1 year ago
0
Experiment plan
#41
ben-silke
opened
1 year ago
2
Update Main from develop
#40
ben-silke
closed
1 year ago
0
OperonHunter
#39
ben-silke
closed
1 year ago
1
Orthoinspector - test data/ validator
#38
ben-silke
opened
1 year ago
1
OrthoFinder
#37
ben-silke
closed
1 year ago
2
test data - quest for orthologs
#36
ben-silke
closed
1 year ago
1
Quest for Orthologs
#35
ben-silke
opened
1 year ago
2
Develop to master
#34
ben-silke
closed
1 year ago
0
Testing
#33
ben-silke
opened
1 year ago
3
prodigal
#32
ben-silke
closed
1 year ago
2
gene mark hm
#31
ben-silke
opened
1 year ago
0
Kegg
#30
ben-silke
opened
1 year ago
1
cd-hit
#29
ben-silke
opened
1 year ago
1
prokka
#28
ben-silke
opened
1 year ago
0
MGnify
#27
ben-silke
opened
1 year ago
0
csv gene names
#26
ben-silke
closed
1 year ago
8
Develop to master
#25
ben-silke
closed
1 year ago
0
using interpro
#24
ben-silke
closed
1 year ago
2
finding orthologs using OrthoDB
#23
ben-silke
closed
1 year ago
3
RFAM database
#22
ben-silke
closed
1 year ago
2
Develop into main
#21
ben-silke
closed
1 year ago
0
FEAT: Source data directly from bacteria.ensembl
#20
ben-silke
closed
1 year ago
1
added Django and created database population script
#19
ben-silke
closed
1 year ago
1
DATA: summary statistics of database
#18
ben-silke
opened
1 year ago
6
DATA: database population
#17
ben-silke
closed
1 year ago
2
Gut Microbiome data
#16
ben-silke
closed
1 year ago
2
Database creation
#15
ben-silke
closed
1 year ago
4
develop -> main
#14
ben-silke
closed
1 year ago
0
meeting 17082022
#13
ben-silke
closed
1 year ago
1
FEAT: add feature in parser to get db_xref as a list
#12
ben-silke
closed
1 year ago
1
update Master from develop
#11
ben-silke
closed
1 year ago
0
Gut Data request
#10
ben-silke
closed
1 year ago
4
Synthetic Sequencing error handling for metagenomic applications
#9
ben-silke
opened
1 year ago
2
wtdbg2 review
#8
ben-silke
closed
1 year ago
2
MetaGeneMark2 review
#7
ben-silke
closed
1 year ago
6
Protein Family Signatures
#6
ben-silke
opened
1 year ago
2
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