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On haddock3 webapp the analysis of `haddock3-re clustfcc` fails
## **Module/Workflow/Library affected**
haddock3-analyse cli
## **Expected behavior**
That `haddock3-analyse` completes succ…
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from the paper I see that you first embed text with text-embedding-3-large, then you use your trained projection network from the contrastive learning.
Can you also release the pretrained text proj…
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Hi, thanks for sharing this code repository and this impressive work!
I understand that dMASIF can calculate the coordinates and normal vectors of protein surface vertices as below.
def pre…
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What steps will reproduce the problem?
1. Actually we tried not to reproduce it :)
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What is the expected output? What do you see instead?
While giving a workshop on PRIDE the tool crashed fo…
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Hi, I love your work and the possibilities that offer being superfast. I was wondering if is it possible in binder design to only design specific residues of the binder knowing the structure of the ot…
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In the page https://gpcrdb.org/signprot/matrix/
when selecting **more than 20** structures to be showed, the **lateral legend** will show _packed_ names and aminoacids (horizontal packing);
when s…
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The database search via the web interface seems fine, but when loading an Uniprot sequence, no protein features are shown.
smoe updated
2 months ago
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Thank you for developing Chroma. Chroma is such an excellent generative AI tool for de novo protein design.
I would like to inquire about how one can use Chroma to design new functional proteins (no…
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Is there any meaningful filter that can be applied to the top 20 designs to narrow down to the top 10 or 5 candidates? What has been your experience?
1. Perhaps just search for diversity of binder …