issues
search
FreyrS
/
dMaSIF
Other
191
stars
44
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
TypeError: argument of type 'method' is not iterable
#53
Lsz-20
closed
3 months ago
2
RuntimeError: operation does not have an identity.
#52
sirenexcelsior
opened
5 months ago
0
faces of the protein surface
#51
lindafei01
opened
5 months ago
1
embedding example
#50
johnnytam100
opened
9 months ago
1
Return value in diagonal_ranges function
#49
gqwshr
closed
9 months ago
0
Why "iface_preds " contain NAN when training dmasif_
#48
BingzeWu
opened
10 months ago
7
How to mathematically define the binding surface?
#47
YAndrewL
closed
10 months ago
1
[Question] Are ligands or PTMs considered
#46
georgkempf
opened
1 year ago
0
Update code for new numpy/pyg/cuda dependencies
#45
jgbrasier
opened
1 year ago
0
Pre-trained model in Hugging face
#44
sivakanishka91
opened
1 year ago
0
About helper.py
#43
pearl-rabbit
closed
1 year ago
0
why the interface is computed like this ?
#42
camel2000
closed
10 months ago
4
How to replace with my own dataset
#41
pearl-rabbit
closed
1 year ago
0
Does anyone have a docker image that can run this project? Can you share it with me?
#40
camel2000
closed
10 months ago
4
Problems regarding loss function and auroc
#39
WHan-alter
opened
1 year ago
0
Using main_training.py
#38
OtaviaW
opened
1 year ago
0
Running you example does not provide same ROC-AUC as claimed in the paper
#37
wjs20
opened
1 year ago
14
Input seems to require a y value
#36
wjs20
closed
1 year ago
2
No save model checkpoints for site prediction
#35
wjs20
opened
1 year ago
2
dMaSIF for interaction prediction, how to find complementary regions?
#34
DavidGraber
opened
2 years ago
3
How to predict the interface characters of single protein?
#33
like996
opened
2 years ago
1
Choice of the atom RADII
#32
Ieremie
closed
10 months ago
1
How to perform massif-ligand "type" tasks with this framework.
#31
ozkilim
opened
2 years ago
0
RuntimeError: legacy constructor expects device type: cpubut device type: cuda was passed
#30
miderxi
opened
2 years ago
0
If i have duplicate pdb 1NPU and 1NPU.can you provide a example of main_inferency.py for masif_site and masif search
#29
miderxi
opened
2 years ago
0
main_inference result analysis
#28
OtaviaW
closed
10 months ago
1
about ply files
#27
phdymz
opened
2 years ago
1
Can you provide more information on the features in the predfeatures numpy file?
#26
ngszyba
opened
2 years ago
6
CUDA memory leak
#25
linminhtoo
opened
2 years ago
8
Runtime and memory much higher than described
#24
rmwu
closed
2 years ago
5
Transform Dataset object to list
#23
geraseva
closed
2 years ago
5
why do we manually loop through each batch ?
#22
linminhtoo
opened
2 years ago
3
Site and Search do not output the same number of atoms
#21
lemairecarl
closed
2 years ago
2
Python version requirements on ubuntu
#20
everyday847
opened
2 years ago
2
mesh ply files from masif preprocessing scripts were not fed into atoms_to_points_normals
#19
jiyanbio
closed
2 years ago
1
Do you know where the group truth site label is loaded in this code?
#18
zshyang
closed
2 years ago
1
Some problem while executing code
#17
tao840813
closed
2 years ago
2
Cannot replicate results using benchmark scripts and provided model
#16
lemairecarl
closed
2 years ago
4
tutorial and use case
#15
jflucier
closed
2 years ago
10
P2 not referenced in single protein site task
#14
sarora11
closed
2 years ago
1
Models available for benchmarking
#13
sarora11
closed
2 years ago
3
Benchmark experiments for site and single protein cannot run.
#12
YannisBilly
closed
2 years ago
1
Tensor triangles must be of type int64.
#11
YannisBilly
closed
10 months ago
0
tarfile.ReadError: file could not be opened successfully
#10
Guolei-Jian
closed
2 years ago
1
Availability of '{pdb_id}_meshpoints.npy' data?
#9
hypnopump
closed
2 years ago
2
save dmasif_search result
#8
jiyanbio
closed
2 years ago
1
Confused about some properties of the data
#7
YifanDengWHU
closed
2 years ago
4
In generate_matchinglabels, is it right that distances between xyz coordinates of p1,p2 were used to define labels?
#6
jiyanbio
closed
3 years ago
1
how can I run the PDL1 example by dmasif?
#5
jiyanbio
closed
2 years ago
1
a tiny error in save_protein_batch_single
#4
jiyanbio
closed
3 years ago
2
Next