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**The problem**
Gene info, including PDB ids comes from https://mygene.info. But for some genes PDB has multiple ids. I.e. for STAT3 mygene.info returns:
[5AX3](https://www.rcsb.org/structure/5AX3) …
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Hi @maovshao
I was using PLMSearch database to find remote homolog of some of my proteins and I was wondering how do I explain similarity value of 0.995 against the target that I got. I am aware t…
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Hi,
Excellent work! I am reading ProtSSN and trying to use it, but I have a few questions:
1) The input in downstream tasks is the entire protein, while the training set uses CATH domains. How do…
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I have monomer MSAs generated for each sequence in a complex, how might I combine them to be used in a multimer structure prediction? I saw https://github.com/sokrypton/ColabFold/issues/601 discusses …
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Protein structures in NGLview could be colored by their quality, eg. red for homology models and silver for experimental models. This gives a quick idea on the quality of information being presented. …
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**Is your feature request related to a problem? Please describe.**
Within existing quantity [Mass](https://github.com/angularsen/UnitsNet/blob/master/Common/UnitDefinitions/Mass.json) there is no uni…
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## Background
* Wikipadia article [about ASN.1](https://en.wikipedia.org/wiki/ASN.1)
* ISO Standard [ISO/IEC 8824-1:2021](ISO/IEC 8824-1:2021), including the [RSS](https://www.iso.org/contents/dat…
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**Project description**
AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By adding the molecular context to the prote…
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Hi tfold team,
I applied tFold-ag to the AbDB dataset, and while it performs well on some proteins, I encountered difficulties predicting other proteins. Upon inspecting the predicted structures, …
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I will likely not implement it in #41 where I planned to because the PR is already enormous. So I write it down here.
We need to support secondary structures for cyclic proteins. Some thought were …