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**Submitting author:** @abhi18av (Abhinav Sharma)
**Repository:** https://github.com/wal-yan/target-methylseq-qc
**Branch with paper.md** (empty if default branch): master
**Version:** v2.0.0
**Editor…
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### Authors
Matthieu Joulot `matthieu.joulot@icm-institute.org`
Ju-Chi Yu `Ju-Chi.Yu@camh.ca`
### Summary
The goal of the project was to evaluate different QC metrics and visuals for pipelin…
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While running following command
nextflow run main_AMR++.nf -profile conda
N E X T F L O W ~ version 24.04.3
Launching `main_AMR++.nf` [elegant_gauss] DSL2 - revision: f6bfe39b99
A M R …
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This issue involves creating appropriate data inputs from PACT raw data for viewing on case-reports.
@kevinmhadi will post the list of plots we expect to be able to view on case-reports given the P…
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### Description of feature
Hi from Lund!
We discussed Tomte today, and what would be needed for us to get it into production.
One thing that came up is that we would want a contamination check.…
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Hello,
I want to update the new version, but I can not see how to QC when running only the script without tracking the database. I want to use this as an older version (FastQC and Samtools QC). Pleas…
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List of action items to incorporate/refactor auxiliary modules in the pipeline:
> Refactoring
- onedspec.py (see also #390)
- koala_ifu.py (see also #400, #417)
- wavelength.py
> KOALA-specif…
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Having trouble running with QSUB. apparently QSUB isn't available on Ubuntu 22 (testing VM) https://redmine.cbrain.mcgill.ca/issues/20698. i tried running with slurm (https://www.mankier.com/1/qsub) a…
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**Is your feature request related to a problem? Please describe.**
Most popuar static code checking tools and linters offer a simple command line interface, where a set of rules is enabled by default…
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- [ ] Create a product config yaml (Katherine)
- [ ] Submit PR for all Alaska FIM product configs to generate pipeline
- [ ] Create a git branch for this service
- [ ] Create a publishing yaml file
- …