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Hello!
First of all thank you for developing Ribo-TISH! I have found it really useful for the QC it provides and also for uORF prediction.
I have a question that I am not sure that it is relevan…
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Hi Alex,
I am currently working on some ribo-seq from human cell lines. The analysis I want to do and some of the tools I want to run require that I have this data mapped to the genome as well as t…
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Hey Lorenzo,
first of all good job. I like Ribo-seQC and SaTAnn very much.
While applying Ribo-seQC on a small Ribo-seq library, I got the following error:
Error in base::colMeans(x, na.rm = na…
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Hi,
I am running the ORFquant as per the instructions mentioned in the manual. While running the "run_ORFquant" it threw me the following error:
````
run_ORFquant(for_ORFquant_file = "sample_R…
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Hi,
I faced the error on the web, but I could not get the log that could help me fix the input error.
![image](https://user-images.githubusercontent.com/42464266/106694498-aeeb4c80-6613-11eb-9fe4-…
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Thank you for your useful tool on ribo-seq analysis,can I plot a specific gene coverage track on cds region?or the p-site mapping data is same as the RPFs coverage on cds ?Thank you for your reply!
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The script is executing until about line 70, judging by the output files present (/Results/fold_changes/deltaTE.txt and Results/Results_figures.pdf, which is empty). I am getting an error that says:
…
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Hi,
I'm testing scikit-ribo on a set of ribo-seq experiments from human cancer cell lines. I am experiencing the same issue reported by @aemoor some months ago while running gtf_preprocess.py (see h…
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Hello, before writing further, I want to say that I have read through previous related open/closed issues but could not find a suitable answer.
The problem: rather different mapping rates depending…
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Dear author,
It's amazing that RiboTaper has his github site.
I had been using RiboTaper for Ribo-seq analysis. But I had suffer a error and had no idea how to solve it.
**Error informatio…