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Hello,
I tried to run SeqDex on a cluster by inputting contigs.fasta produced by SPAdes and the sam alignment from Bowtie2 and I got the following error:
```
[bam_sort_core] merging from 0 files …
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Hello.
I have metagenome fsatq files.
How can I analyze files by converting them?
thanks.
Kohei
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Hi ,
I have different datasets .
I am bit confused why you have not specified the bam and sam files. Instead, you have given them temp file names
Could you please make me understand t…
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Hello,
Can this software be used to annotate plant mitochondria as well? If so, any tweaks required in the software? What are the drawbacks in calling plant mito genes.
Thanks
Abhijit
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1. As a next step for this project, Marc should try to retrain the MXfold2 PyTorch models to see if the retrained model can reproduce the performance using the same neural network architecture and par…
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Any new feature requests.. can put them here.
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Hallo.
Can you help me?
anna@anna-G3-3590:~$ prokka
Name:
Prokka 1.14.5 by Torsten Seemann
Synopsis:
rapid bacterial genome annotation
Usage:
prokka [options]
General:
--help …
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Bacterial gene prediction doesn't usually rely heavily on external evidence to generate gene models. JGI uses GenePrimp as a post-processor, whereas NCBI PGAP searches every single ORF
in the geno…
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**Issue**
I installed bakta v1.8.2 via conda, the installation was successful but bakta was not operational (it fails and provides an error message - see below). I compared that environment with an o…
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Hi!
I am trying to use Platon 1.6 installed with BioConda to identify plasmid contigs. By running the following command:
platon contigs.fasta --db ~/Databases/db --output platon_accu --mode accura…