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Hi,
I am using IGV version 2.18.2 on linux. When plotting reads per BAM file, I noticed that the genome track exhibits color overlap, as shown in the attached picture.
![IGV_question](https://git…
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# Quick Facts
## Abstract
After a long and weary journey, Frodo and Sam finally reached Mount Doom and began climbing it. They went many days with hardly any food or water, and Frodo became progre…
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### Description:
Hello, I noticed an issue regarding nested stack declaration when used in an AWS SAM template file. On deletion, the version_checker.py raises the following error: _URL given to th…
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## Problem
When trying to debug a lambda function locally, I get this error:
```
2024-10-21 11:27:00.811 [error] SamLaunchRequestError: Invalid launch configuration: Debug Configurations with an …
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Hi! Francisco
While running the `-t abundance ` I am running into a problem with the sam to bam conversation due to a duplicate header. When I checked the grep "NODE_1753_length_683_cov_1.602310" FDS…
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when trying to add a SAM to a Graph after a TorchVisionTransformation node, a "Unsatisfied dimensionality constraint!" Error is thorwn.
This is due to the TorchVisionTransformation having (-1,-1,-1) …
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Hello,
We are currently trying to run Anchorwave on the huge Axolotl genome (32 Gbp) and we are getting the following error:
Command:
```
anchorwave proali -t 19 -i GCF_000001405.39_GRCh38.p13…
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I'm getting this message when running sam2, but it's working.
Skipping the post-processing step due to the error above. You can still use SAM 2 and it's OK to ignore the error above, although some po…
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Unable to import module 'lambda_function': No module named pgpasslib
I used the VPC template for us-east-1
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The training test is very slow since yesterday. I am skipping it for now, see:
https://github.com/computational-cell-analytics/micro-sam/blob/master/test/test_training.py#L13-L14
But we should fig…