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baoxingsong
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AnchorWave
Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation
MIT License
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final pro
#76
xiaodli
closed
6 days ago
0
fix a bug(sort about pro)
#75
xiaodli
closed
1 month ago
0
Merge gVCF
#74
zhengluo-lz
closed
1 month ago
6
MAF FORMAT
#73
Zhaoqiyue5
opened
3 months ago
1
Chromosome naming for polyploid
#72
SamCT
closed
3 months ago
2
proali Error “line 22: 54565 Killed "${EXE}_avx512" "$@"”
#71
mushroomOK
opened
5 months ago
1
How to combine the pairwise alignments into multiple sequence alignments？
#70
socialhang
closed
3 months ago
4
proali error within phg: line 22: 4021905 Floating point exception"${EXE}_sse4.1" "$@
#69
eead-csic-compbio
closed
6 months ago
2
Wrong query postion of inverion in MAF output
#68
baozg
closed
6 months ago
4
How to transfer the maf to fasta by msa_view?
#67
zhangzhiyangcs
closed
5 months ago
2
add query_order column and ref_order column in the pro command section
#66
xiaodli
closed
7 months ago
0
Can AnchorWave be used for calculating identities of pairwise alignments in whole genome comparisons?
#65
cjchen5
opened
7 months ago
1
syncmers?
#64
cnk113
opened
8 months ago
1
Matching sequences align as 2 indels in paf CIGAR string
#63
JingaJenga
opened
8 months ago
13
modify four file related to pro
#62
xiaodli
closed
9 months ago
0
The problem of 'anchorwave proali'
#61
xuxingyubio
opened
9 months ago
5
The MAF file sizes are unstable in the AnchorWave ProAli genome alignment results
#60
jiaanqiang
closed
9 months ago
2
Error: could not get output VCF file
#59
Bank-tidy
opened
10 months ago
3
Update CMakeLists.txt： support aarch64（arm 64）
#58
focusunsink
closed
11 months ago
0
[CMAKE] Use compiler message to set compiler intrinsic options in x86
#57
focusunsink
closed
11 months ago
0
Error: could not parse the input VCF
#56
wangzhx36
opened
1 year ago
1
Proali Core Dumped
#55
conJUSTover
closed
11 months ago
3
Much slower speed of T2T A.thaliana alignment
#54
baozg
closed
1 year ago
2
there is no match anchor found in the input sam file
#53
owensgl
closed
1 year ago
2
MAFToGVCFPlugin Error
#52
socialhang
closed
1 year ago
5
Merge and genotype gvcf from AnchorWave
#51
baozg
closed
1 year ago
2
Make SAM parsing more efficient on NFS volumes
#50
idavi-bcs
closed
1 year ago
0
Performance issue in readSam() interacts badly with NFS
#49
idavi-bcs
closed
1 year ago
2
How should I align chromosome regions between distantly evolutionary species?
#48
Rafaelsoler13
opened
1 year ago
1
example data core dumped "{EXE}_sse4.1""$@"
#47
HozumiLv
opened
1 year ago
6
pread error / Assertion temp.compare(queryGenomerSequence) == 0 failed
#46
matthewwiese
closed
1 year ago
3
running proali from custom gff files
#45
aleksicmil
opened
1 year ago
2
What happened to maf2vcf function?
#44
cizydorczyk
closed
1 year ago
2
Can the anchorwave results be used for subsequent multi-genome alignment?
#43
WU-WEIHONG
closed
1 year ago
2
Error in MAFToGVCFPlugin
#42
ccmenard
opened
1 year ago
1
Add CMakeLists for ARM
#41
tanghaibao
closed
1 year ago
0
Lack of understanding of MAF to VCF conversion
#40
Deng-Yuan
opened
1 year ago
1
What information Anchorwave require to be able to parse the gff file correctly?
#39
diaspj
opened
1 year ago
3
Identify Duplication
#38
wyim-pgl
opened
1 year ago
2
regex_error in V1.0.1
#37
owensgl
closed
1 year ago
2
Empty CDS file from gff2seq
#36
nwespe
opened
2 years ago
9
no species name in MAF output
#35
leejimmy93
closed
2 years ago
2
Segmentation fault with `genoAli`
#34
aseetharam
closed
2 years ago
1
AnchorWave on a very repetitive plant genome
#33
agolicz
opened
2 years ago
7
Too many mismatches and could you please give some advice on alignment parameters?
#32
Yutang-ETH
closed
1 year ago
5
Converting maf to sam
#31
Yutang-ETH
closed
2 years ago
8
Is it possible to output whole genome alignment in paf format?
#30
Yutang-ETH
closed
2 years ago
3
How to align the genomes at conting or scaffold level？
#29
naturalstay
opened
2 years ago
1
there is no match anchor found in the input sam file
#28
peterdfields
opened
2 years ago
9
Anchorwave ali documentation
#27
diego-rt
closed
1 year ago
1
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