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Hi there,
I created a PanGraph of 200 SARS-CoV-2 sequences using FASTA sequences as input, and it seems that eleven of them aren't represented incorrectly in the JSON file. I have uploaded the data…
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Dear nextstrain team,
First, thank you for your work!
We recently updatated our nextclade sars-cov-2 classic dataset (from 2024-06-13T23:42:47Z to 2024-07-17T12:57:03Z).
however, our last seque…
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From https://github.com/sars-cov-2-variants/lineage-proposals/issues/1825
KP.3.1.1+T15567C, A23723G(S:S721G)
GISAID query: T15567C, A23723G, C12616T
No. of seqs: 63(Australia 1 Austria 1 Denmar…
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Hello,
I noticed that the file 'sera_343C_mediumACE2_mut_effect.csv' in your repository contains the same columns as 'sera_343C_mediumACE2_mut_icXX.csv', such as 'Lib2-230815-sera-343C_mediumACE2'. H…
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from: https://github.com/sars-cov-2-variants/lineage-proposals/issues/1983
tree: https://nextstrain.org/fetc…
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From branch 21 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1502
and branch 4 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1771
This used to be a UK clu…
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New 31del-493E-1104L carrying recombinant likely between Unknown(not KP*)/KP.3.1.1 with breakpoint after 19722 ( all unsure in my view)
that gained further S:E702V and S:R102K
Query: G11283A, C1776…
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There seem to be several people in the introductions thread (#17 ) who are interested in zoonotic diseases, a topic that is currently missing from [the introduction section outline](greenelab/covid19-…
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From https://github.com/sars-cov-2-variants/lineage-proposals/issues/2094
KP.3.1.1+C28519T(Orf9b:T79I)+T13120C,G25340T(S:D1260Y)
Besides the spike and orf9b mutation, it is also worth noting tha…
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There is a S:D111N lineage emerging from LU.2.1.1
LU.2.1.1 > S:D111N (G21893A)
Query:G21893A,G7675T, C5826T
Samples: 6
Places: Ny, Ontario
it was sampled first in July but 5/6 are recent from l…