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let's track interesting tidbits for brainstorming...
practical plusses of sourmash impl --
* multiple databases can be searched all at once.
* public and private databases supported
from https…
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In the current implementation `n` and `scaled` are exclusive: if you set one, the other must be unset.
If we have enough hashes, we can convert from a scaled minhash back to a regular mash sketch (…
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continuing to riff off of recent progress in picklists and manifests, and ref https://github.com/dib-lab/sourmash/issues/1352#issuecomment-860237822 in particular -
right now, LCA databases serve a…
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while they are nice to have around and are not much of a maintenance burden, they do complicate things --
see #1345, #870 for examples.
they are also not usable for a lot of purposes.
Discuss…
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When overwriting a zipped sbt with `sbt.save(sbt_file)`- either with a new one, or loading and adding to the existing sbt, I get an ignored exception.
Looks like is show up when different signatur…
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hi @richarddurbin, @luizirber pointed me at this repo and I wanted to drop you a note --
we have been using an analogous concept in [sourmash](https://github.com/dib-lab/sourmash/), that is identic…
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PR https://github.com/dib-lab/sourmash/pull/882 raised a question in my mind about the various similarity and comparison methods on MinHash objects. We have `similarity`, `compare`, and `jaccard`, as …
ctb updated
10 months ago
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I've been digging into some `Storage` stuff, and thinking about:
* `SourmashSignature` and how we treat signatures and `MinHash` objects as 1:1
* how selectors on databases are really tightly tied…
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In https://github.com/dib-lab/sourmash/pull/1395, I detail some fun ways to make the rust code return invalid `MinHash` objects because `merge` does Bad Things when handed mixed pairs of abundance/non…