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**User story**
As a user of the scRNA Core pipeline, I would like the LIMS to help me prevent 'donor clash' when I am pooling together tubes for sequencing. This means that the pool should not contai…
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**User story**
As PSD, we would like to support Limber plate purpose configuration using the versioned Tube Rack model proposed in Reuse of TubeRacks document.
**Who are the primary contacts for t…
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Hi @hxj5 , I have a question regarding 10X 5' scRNA-seq data.
For 5' sequencing, the read containing cell barcode and UMI contains part of the transcript https://kb.10xgenomics.com/hc/en-us/article…
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Hi,
Could you tell me how to get package named "sir" in some notebooks of scRNA-Seq-invivo/analysis_pipeline directory.
I guess that the sir package means sir directory in the scRNA-Seq-invivo/analy…
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I went through your pipeline and the part that is producing the first two input files for scRNA_scATAC_Integration_04_Link_TFs_To_Targets.R script is missing. Could you please clarify about this part …
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**User story**
As a SeqOps user of the scRNA banking pipeline, I would like there to be an intermediate tube between the initial vacutainer tube and the first plate. This is because I will be manuall…
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**User story**
As a user of the scRNA Core pipeline, I would like the donor pooling step (into the LRC PBMC Pools plate) to allow only one source plate.
This change is due to the decision being t…
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**User story**
As a user of the scRNA Core Cell Extraction pipeline, if I have made multiple sets of child tubes from the LRC PBMC Bank plate, I would like to be able to perform the bed verification …
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**User story**
As a user of the scRNA Core pipeline, I would like updates to the PBMC Donor pooling to support GEM-X chip.
**Who are the primary contacts for this story**
Katy, Lesley, Abby
**…
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Hi,
Thank you for developing this incredibly useful pipeline. It has been instrumental in my scRNA-seq analysis work. I have encountered an interesting issue while using the script provided: when u…