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Create SED-ML annotations for any analysisView properties not already supported in our SED-ML file.
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Such as
- Steady-State Analysis
- Stoichiometric State Analysis
- MCA
- Lyapunov Exponents
- Time Scale Separation
- Sensitivity Analysis
Todo
- [ ] Map each COPASI method/parameter to a Ki…
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I haven't had a chance to look at this closely yet, so this is somewhat of a guess, the continous builder has been failing for ~8 days due to the following;
```
+ find /host/out/pdk-all /host/out/pd…
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**Which problem would you like to address? Please describe.**
The CellML team is about to implement support for parameter estimation in OpenCor, and originally investigated PETab as the format to use…
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Example: https://github.com/virtualcell/vcdb/blob/main/published/biomodel/omex/sbml/biomodel_12119723.omex
The archive has 6 SBML files, but the SED-ML only simulates 3. The native version, only ha…
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When there are multiple variables like in the test-suite concentration calculations it does not work.
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I have been looking into the possibility of using lcov's genhtml to generate a custom coverage dashboard for . This project is written in Python, so I'm experimenting with several different ways of c…
zackw updated
1 month ago
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= Description =
- Allow source attribute in sedml:model to reference other models by id.
= Context =
- SED-ML allows model to reference other models in source attributes, as shown below:
{{{
#!xm…
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Hi,
I tried to build the hunpos binaries for OSX using the provided build script.
I get this error:
```
Finished, 1 target (0 cached) in 00:00:00.
/usr/local/lib/ocaml/libasmrun.a
mkdir hunpo…
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Which of the following does VCell support? If needed, the specifications (`biosimulators.json`) should be revised.
- [x] SED-ML compute model changes
- [x] SED-ML add/remove/change XML model changes…