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PEtab-dev
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PEtab
PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology
https://petab.readthedocs.io
MIT License
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Fix petab_files.svg
#584
dweindl
closed
11 hours ago
0
Handling of events on parameters that are subject to condition specific values.
#583
leodarrigade
closed
3 weeks ago
4
WIP: Specification of Timecourses
#581
fbergmann
opened
1 month ago
1
Update documentation stack
#580
dweindl
closed
1 month ago
0
Specification of math expressions
#579
dweindl
closed
1 week ago
1
PEtab result schema
#578
PaulJonasJost
opened
1 month ago
0
Allow formulas in condition table
#577
matthiaskoenig
opened
1 month ago
1
Update editors 2024
#576
dilpath
closed
3 months ago
0
Update editorial board page
#575
dweindl
closed
2 months ago
0
Doc: describe observable overrides in noise formulae
#574
dilpath
closed
6 months ago
0
Add CITATION.cff
#573
dweindl
closed
6 months ago
1
No reference to paper in repository
#572
FFroehlich
closed
6 months ago
1
Explicitly exclude SBML local parameters from parameters table
#571
dweindl
closed
8 months ago
1
Global vs local SBML parameters
#570
leodarrigade
closed
8 months ago
1
Allow species in `yValues` of the visualization table
#569
paulflang
opened
8 months ago
2
Update PETab to be model format agnostic
#568
luciansmith
opened
8 months ago
4
PEtab extension for NLME
#566
paulflang
opened
11 months ago
15
add PumasQSP to README
#565
paulflang
closed
11 months ago
0
Time-dependent changes in component values
#564
dilpath
opened
1 year ago
6
Fix .rst formatting
#563
dweindl
closed
1 year ago
0
Allow using observable IDs in `observableFormula` and `noiseFormula`
#562
dweindl
closed
1 week ago
1
Add tool using PEtab
#561
eraimundez
closed
11 months ago
0
Update packages
#560
dweindl
closed
1 year ago
0
Fix sphinx doc
#559
dweindl
closed
1 year ago
0
Add PEtab.jl to README
#558
sebapersson
closed
1 year ago
1
Clarification/specification of order of condition changes required
#557
matthiaskoenig
opened
1 year ago
5
- update copasi tests
#556
fbergmann
closed
1 year ago
0
No Noise
#555
tinop99
closed
1 month ago
13
Add PEtab 2.0 draft
#554
dweindl
opened
1 year ago
3
clarify amount/concentration
#553
FFroehlich
closed
1 year ago
2
Update editorial board
#552
dweindl
closed
1 year ago
2
Add CODEOWNERS
#551
dweindl
closed
1 year ago
0
Update requirements
#550
dweindl
closed
1 year ago
0
Update README
#549
dweindl
closed
1 year ago
0
Specification of model time in observables file unclear
#548
shoepfl
closed
1 year ago
2
Clarify implications of 'parameterScale'
#547
dweindl
closed
1 year ago
0
Bounds documentation needs clairification
#546
shoepfl
closed
2 years ago
2
Add `required` attribute to extensions in yaml file
#545
dweindl
closed
1 year ago
0
Extensions: required/optional
#544
dweindl
opened
2 years ago
2
Allow using observables in noiseFormula
#543
dweindl
opened
2 years ago
2
Clarification of condition table what happens if NaN is provided as a value
#542
matthiaskoenig
opened
2 years ago
0
Clarification for condition table what happens if a parameter ID is provided as value
#541
matthiaskoenig
opened
2 years ago
1
Support time dependent changes in conditions
#540
matthiaskoenig
opened
2 years ago
3
Condition table not specified for parameters governed by rate rules
#539
matthiaskoenig
opened
2 years ago
3
Proposal: Different languages for model specification
#538
dweindl
closed
4 hours ago
2
Proposal for the introduction of extensions
#537
FFroehlich
closed
2 years ago
0
Update editorial board
#536
dweindl
closed
2 years ago
0
Change main branch name "master"->"main"
#535
yannikschaelte
closed
2 years ago
2
Replace optimization by estimation in docs
#534
FFroehlich
closed
2 years ago
0
Rename observables table observable table.
#533
FFroehlich
closed
2 years ago
1
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