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Hello Team,
I simulated a shotgun metagenomic Nanopore dataset using NanoSim, containing:
65% bacterial sequences from 32 bacterial species
35% human sequences
For profiling, I created a Sylph…
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## Description
In Camunda Process Test, I want to see the process coverage after running the process tests (i.e. which BPMN elements were completed and which sequence flows were taken during the te…
saig0 updated
3 weeks ago
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I'm running medusa at commit `95f69b4c7224851cc200631f728965b7e2ac5ebb`.
Issue #231 is closely related, although the PR fixing that one doesn't seem to do the job here.
Issue #299 is also relate…
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It fails consistently now.
https://github.com/EspressoSystems/espresso-sequencer/actions/workflows/coverage.yml
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**Is your feature request related to a problem? Please describe.**
The subscriober module should have interface coverage capturing. This is needed to analyze the stimulus applying on DUT.
**Descri…
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Hi Yan,
I use abPOA to generate a consensus from four sequences. Here is the distribtuion of n_seq / n_cov in each base in the consensus sequence. My question is, is there a way to remove low cover…
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Lims Issue
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For definitions of headings below see [Basic Concepts](https://atlas.scilifelab.se/infrastructure/lims/basic_concepts/basic_concepts/).
**Work Flow:** NovaSeq X v1
*…
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`chr8 107947966 Minda_144 N . PASS SVLEN=506;SVTYPE=INS;SUPP_VEC=ONT_Sniffles2.INS.2CCM7,ONT_severus_INS20827,ONT_i_333,ONT_ID_24352_1,PB_severus_INS18356,PB_Sniffles2.INS.2A7M7,PB_i_827,PB_ID_47904_…
jzook updated
3 weeks ago
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Is it possible to lower the coverage threshold when running `dorado correct file.fastq.gz`?
I would like to be able to perform the correction even if the coverage is below whatever is the default t…
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`treesapp abundance` calculates TPM or FPKM for entire query sequences. The depth of coverage, however, is unknown.
A new feature that reports the pile-up along each query sequence's length would b…