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I have whole exome sequencing data from tumor and their matched normal samples. Can I use oncoanalyser to process this data e.g. by setting the mode to wgts?
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### Checked for duplicates
No - I haven't checked
### Is this a regression?
No - This is a new bug
### Version
2.11.2
### Describe the bug
The Aerie sequencing service is crashing when attempti…
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# Main point
The contents of (the EVM's) memory are irrelevant for line counting in the `MMU`/`MMIO`. Everything that matters are the underlying (`MMU`) instruction, various offsets and sizes. Ther…
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I am working on a CRISPR data treated by two sgRNAs and sequenced with targeted sequencing. The distance between the two sgRNA is 3000bp which is much longer than amplicon. The targeted area is the w…
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Construction patterns are rules for adding inferred assets and/or relationships to a system model. They fill in details that users may be unable to provide, or may forget to provide, where they are de…
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>python main.py --data_file "E:/00Dropbox/UFL Dropbox/Xueyan Gao/Gates Project_Course Sequencing in FL and WV/Wei Analysis/Xueyan's work/6_MathPathAnalysis_20241106/3_Causal Copilot_241119/MathPath_Da…
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https://gitlab.dev.singlecell.gi.ucsc.edu/ucsc/azul/-/jobs/103847
```
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FAIL: test_indexing (integration_test.IndexingIntegrat…
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Hi,
I hope you are well.
I am kindly writing to learn whether it is possible to use Sniffles2 to investigate SVs in direct RNA sequencing data. I have seen in previous issues that there is a relat…
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Hello:
Would it be possible to please document some error codes on the API, such as:
`empty message`
`woodpecker prohibited`
...and others?
Also a brief explanation of what they mean would be…
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The ARMS samples processed by genoscope will be ingested into GH (as soon as the logsheets are created and filled and harvested).
For some ARMS samples, the sequencing was done twice on the same samp…