issues
search
nf-core
/
oncoanalyser
A comprehensive cancer DNA/RNA analysis and reporting pipeline
https://nf-co.re/oncoanalyser
MIT License
26
stars
5
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Compatibility of IonTorrent BAM Files for HRD Analysis with nf-core/oncoanalyser
#92
Sadiki-Noureddine
opened
5 days ago
0
Improve input validation for FASTQ
#91
scwatts
opened
5 days ago
0
Update CHANGELOG.md
#90
scwatts
closed
1 week ago
1
invalid file type: 'fastq'
#89
jkneppers
closed
1 week ago
1
Fix software version reporting
#88
scwatts
closed
2 weeks ago
1
Update PAVE somatic command
#87
scwatts
closed
2 weeks ago
1
Add missing conda directive to MarkDups process
#86
scwatts
closed
3 weeks ago
1
Release 1.0.0
#85
scwatts
closed
6 days ago
1
Add documentation describing workflow design choices
#84
scwatts
opened
3 weeks ago
0
Implement basic sequence and alignment QC reporting
#83
scwatts
opened
3 weeks ago
0
Determine whether certain Groovy syntax should be removed
#82
scwatts
opened
3 weeks ago
0
Reintroduce MultiQC for workflow and analysis summary
#81
scwatts
opened
3 weeks ago
0
Add reference data to iGenomes
#80
scwatts
opened
3 weeks ago
0
Determine future feasibility of switch to nf-core bump-version
#79
scwatts
opened
3 weeks ago
0
Fix panel parameter validation during pre-flight check
#78
scwatts
closed
3 weeks ago
1
Setting targeted mode without a panel gives an error message containing null
#77
SPPearce
closed
3 weeks ago
1
Allow RNA BAM from samplesheet as LILAC input
#76
scwatts
closed
3 weeks ago
1
Move fastp arguments to modules.config
#75
SPPearce
opened
1 month ago
2
Eliminate bottlenecking of markdups
#74
SPPearce
opened
1 month ago
1
UMI support in WGTS mode
#73
SPPearce
opened
1 month ago
1
Apply the seventh set of reviewer recommendations
#72
scwatts
closed
1 month ago
5
Shrink reference data to support execution on GHA runners
#71
FriederikeHanssen
opened
1 month ago
1
Apply the sixth set of reviewer recommendations
#70
scwatts
closed
1 month ago
1
Update documentation in usage.md
#69
scwatts
closed
1 month ago
1
Apply the fifth set of reviewer recommendations
#68
scwatts
closed
1 month ago
1
Apply the fourth set of reviewer recommendations
#67
scwatts
closed
1 month ago
1
Add support for custom targeted panel
#66
bounlu
opened
1 month ago
1
`samplesheet` format is not recognised
#65
bounlu
closed
1 month ago
6
Apply the third set of reviewer recommendations
#64
scwatts
closed
1 month ago
1
Gene fusion detection
#63
bounlu
closed
1 month ago
3
Apply the second set of reviewer recommendations
#62
scwatts
closed
1 month ago
1
Correct Nextflow schema entry for Isofox read length
#61
scwatts
closed
2 months ago
1
isofox_read_length does not have a 'type' attribute
#60
alexiswl
closed
2 months ago
0
Use correct MarkDups version in Conda env and documentation URL
#59
scwatts
closed
2 months ago
1
Bump SAGE to 3.4.4
#58
scwatts
closed
2 months ago
1
Bump AMBER to 4.0.1
#57
scwatts
closed
2 months ago
1
Correct read processing subworkflow optional output channel
#56
scwatts
closed
2 months ago
1
Markdup doesn't accept unpaired reads aligned with minimap2
#55
charlenelawdes
closed
1 month ago
2
symlink specific gridss index files
#54
casslitch
closed
2 months ago
10
Fix directory shadowing symlinks
#53
scwatts
closed
2 months ago
1
Bump MarkDups to 1.1.7
#52
scwatts
closed
3 months ago
1
Migrate from nf-validation to nf-schema
#51
scwatts
opened
3 months ago
0
Assess suitability of local modules for transfer to nf-core/modules
#50
scwatts
opened
3 months ago
0
Apply the first set of reviewer recommendations
#49
scwatts
closed
3 months ago
1
Bump bwa-mem2 container build
#48
scwatts
closed
3 months ago
1
Bump SvPrep to 1.2.4
#47
scwatts
closed
3 months ago
1
Bump Sambamba to 1.0.1
#46
scwatts
closed
3 months ago
0
Bump MarkDups 1.1.5 to Bioconda build hdfd78af_1
#45
scwatts
closed
3 months ago
0
task: name=NFCORE_ONCOANALYSER:WGTS:READ_ALIGNMENT_RNA:STAR (1); work-dir=null
#44
taijiyamazoe
closed
3 months ago
8
Use all available threads for fastp process
#43
scwatts
closed
3 months ago
1
Next