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### Describe the Bug
When activating the token simulation in Camunda Modeler for a BPMN process that contains a collapsed sub-process, I cannot navigate into the sub-process.
**Problem: The blue…
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1. Goal: Illustrate the use of the PRYSM API to transform model output to proxy space.
2. Description: Long ago, @fzhu2e coded up [PRYSM](https://doi.org/10.1002/2015MS000447) as a convenient and e…
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Hello! Due to modeling needs, I need a reasonable orthogonal CSH model, but the model generated by pyCSH is a triclinic crystal model, I tried some orthogonalization methods, but the simulation still …
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We should likely settle on a naming scheme for our IO. Currently, we have three different file classes of interest, with differing schemes
| file type | current pattern | purpose |
| -- | -- | -- …
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In the code file names in `inst/include/`, several of the names are very helpfully names to know what is in them: https://github.com/mrc-ide/frogger/tree/main/inst/include
[general_demographic_proj…
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![image](https://github.com/user-attachments/assets/f0d8661a-9977-46f9-bfbe-5c282d3157db)
When I try to run the simulation with the commands provided in the Readme file, I get this error (screensho…
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**Describe the bug**
I noticed that the text in the status bar wasn't making much sense during a batch experiments when pref_parallel_simulations_all is true:
1. In an exploration experiment:
1…
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### Question
![Screenshot from 2024-09-25 10-54-24](https://github.com/user-attachments/assets/398869bb-b049-42f1-97e8-9bde42be0778)
as you can see in the image, I created a cylindrical shaped long …
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### Simulation tool
### Simulation tool
---
id: vcell
version: 7.5.0.27
specificationsUrl: https://github.com/virtualcell/vcell/releases/download/7.6.0.27/biosimulators.json
specificationsPa…
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I'm doing a lot of simulations, and have heavy issues with simulation time and memory. I can solve the time issue (put everything into joblib and run simulations in parallel), but this lib uses insane…