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Preferred Term: m6A-MTase sequencing assay
Synonyms: Fiber-seq
Definition: A DNA methylation profiling assay in which chromatin stencils are created by treating nuclei with m6A methyltransferase (MT…
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# Steps to reproduce
1. Simulate a previous (partial) run of `Nuclei_localization.py`: `mkdir -p emt_tmp/nuclei_localization`
2. Follow the virtual environment creation steps from the README.md:
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**Primary Wrangler:**
Marion Shadbolt
**Secondary Wrangler:**
Enrique
**Associated files:**
Google Drive:
https://drive.google.com/open?id=1gnB0anWGADLlwhGHLBQb3AowIpB8145p&authuser=msha…
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I am working with a large single-nucleus ATAC dataset (150k nuclei, 360k peaks), but have gotten stuck at the "Caching data to disk" section of the "Atlas-level integration" [tutorial](https://mira-mu…
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### Please describe your feature request:
The task is about investigating parallel execution of Integration/Functional Tests that are now executed sequentially leading to long waiting time.
As most …
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Hi
That's a great method! I'm wondering if, without the reference data and positive/negative markers (I only have the DAPI image and transcripts.csv), this method is still viable for cell segmentati…
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I've been trying to play around with shadowclones, but need help with commands for below situations:
- Running a single nuclei template on the local machine for all the targets in resolved_subs.txt…
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In many scenarios, I will fingerprint different targets, and then convert the fingerprint recognition results into tags for Nuclei to perform vulnerability detection.
When I need to send a large nu…
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Installed on a kali linux system and it started this and assumed it was because Kali, so i installed a fresh Ubuntu box and getting same results.
When running the first scan example, i dont really …
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Hi,
Thanks so much for this helpful tool! When I analyze my single nuclei dataset, I'm able to run pseudobulk and mixed model analyses through Libra but when I attempt to run a single cell analysis…