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Good morning,
thanks for the awesome tool!
I have a question regarding processing MP2RAGE images acquired at 7T. I run the tutorial "Tissue classification from MP2RAGE data". Using the sample data p…
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### What version of fMRIPrep are you using?
20.2.0rc0
### What kind of installation are you using? Containers (Singularity, Docker), or "bare-metal"?
TACC run
### Details
@jbwexler …
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我在使用FSL bet去颅骨时,在3T上表现尚好,但是在7T数据上经常出现处理后图片破损(7T脑组织部分随颅骨一起被去除)的现象,调整参数并没有太大帮助,请问这个问题有什么好方法吗?
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https://surfer.nmr.mgh.harvard.edu/docs/synthstrip/
but it's also included in the new fressurfer release
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Hello,
I'm working on registration on longitudinal CT-Scan of chest/abdomen/lungs and I'm wondering if I should do the same preprocessing steps used in the voxel morph paper for the brain; i.e, aff…
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I am trying to run the inference cpu docker container however I am running into an issue that it is not setting the BRAIN_MASKING environ variable correctly and therefore not importing brain_extract…
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Dear fmriprep experts, we recently encountered an issue with our T1 skull stripping using fMRIprep. Part of dura mater was included in the brain mask leading to very poor EPI-T1 registration.
The com…
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Hello, sorry to disturb you again. I tried to train the model on this code, but the results seemed unsatisfactory. Could you please provide one of your trained pt files for direct testing? The graph b…
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https://github.com/FCP-INDI/C-PAC/blob/448cbf0cafa9a15823b5289f9beb237f77ba2ce9/dev/docker_data/default_pipeline.yml#L115
The advanced parameters for skull stripping, etc.. are a bit confusing as t…