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### What version of fMRIPrep are you using?
20.2.0rc0
### What kind of installation are you using? Containers (Singularity, Docker), or "bare-metal"?
TACC run
### Details
@jbwexler …
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Hi,
I m trying to run RSS on my MacBook M1, however I ve stuck on the very beginning. I ve installed CPU-only version, however when started the script to run I get such error:
`Traceback (most rec…
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I am trying to run the inference cpu docker container however I am running into an issue that it is not setting the BRAIN_MASKING environ variable correctly and therefore not importing brain_extract…
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Hello,
I'm working on registration on longitudinal CT-Scan of chest/abdomen/lungs and I'm wondering if I should do the same preprocessing steps used in the voxel morph paper for the brain; i.e, aff…
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Dear fmriprep experts, we recently encountered an issue with our T1 skull stripping using fMRIprep. Part of dura mater was included in the brain mask leading to very poor EPI-T1 registration.
The com…
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Derivatives has introduced a REQUIRED metadata field `SkullStripped` to imaging files.
https://bids-specification.readthedocs.io/en/stable/05-derivatives/03-imaging.html#preprocessed-coregistered-a…
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Dear all,
I am trying to run LINDA from R, but this is what happens:
```
16:49 Starting LINDA v0.5.1
16:49 Creating folder: /mnt/d//sub-005/linda
16:49 Loading file: sub-005_ses-01_T1w_3D.nii…
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Hi, I ran the following command to process the T1w image:
`docker run --gpus '"device=0"' --rm -v /home/ANAT/Data/batch01:/InfantData --user 1019:1017 ibeatgroup/ibeat_v2:release205 --t1 InfantData/S…
ZZLXY updated
2 months ago
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https://github.com/FCP-INDI/C-PAC/blob/448cbf0cafa9a15823b5289f9beb237f77ba2ce9/dev/docker_data/default_pipeline.yml#L115
The advanced parameters for skull stripping, etc.. are a bit confusing as t…