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**Software Versions**
```
$ pip list | grep snakemake
snakemake 8.19.0
snakemake-executor-plugin-cluster-generic 1.0.9
snakemake-executor-plugin-slurm …
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Hi,
I am trying to run grenepipe with SLURM. When I use the v0.13.1 release with a new install of micromamba, I get this error:
```
No SLURM account given, trying to guess.
Guessed SLURM acc…
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**Description:**
When running a '**SlurmPipelineExecutor**' pipeline on my HPC cluster, I encounter dependency issues that result in a failed execution. The problem arises during the stats collection…
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I just tried to submit a few lammps jobs. They crash immediately with following error. Does anyone else also encounter these problem?
-----------------
> couldn't read file "/mpcdf/soft/SLE_15/p…
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**Software Versions**
```
$ snakemake --version
8.16.0
$ conda list | grep snakemake-executor-plugin-slurm
snakemake-executor-plugin-slurm 0.8.0 pyhdfd78af_0 bioconda
snakemake-e…
KB1RD updated
3 weeks ago
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### Describe the bug
With v.1.32.1 of the toolkit I've had a common issue with the cluster failing to upload the slurm accounting data to BigQuery. At some point in time the data would no longer ap…
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Thanks in advance for the support. I am trying to align approx. 90 mammal genomes on a slurm-enabled cluster. Running like this:
```
TOIL_SLURM_ARGS="--partition=macmanes --exclude=node116,node1…
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`sbatch` has a handy `--comment` that allows adding metadata to jobs:
```sh
sbatch -h | grep comment
--comment=name arbitrary comment
```
i'd like to use this to connect my slu…
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## Summary
It looks like BABS currently submits a separate job for each subject/session, but an array job would be nice. Proposed by @mattcieslak.
tsalo updated
2 months ago
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Currently, we can use --hosts to pass the host list on the fly to MPI, for example.
We should have a generic option like:
--extra-args, or something;
With this we can pass the host list directly …