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Joseline said that if the reference file has a lot of Ns, it might throw a lot of SNPs.
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Hi there:
I called SNPs using freebayes and got 2 SNPs (15725855 and 15726131) but the variant is now shown in IGV, is my process wrong or sth else?
This occurred to other sample with depth more tha…
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Hi,
I'm new to confidential computing, and I want to test AMD sev_snp cooperating with Nvidia H100 to enable CC capability. However, I can't enable sev_snp by following the tutorial of sev-snp-deve…
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Hello Jiabo Wang, I want to know how I get PVE result For each SNP, because the output of PVE file is only for P values
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Hello,
I am currently experiencing an isue with using PolyOrigin for imputation of a panel of F1 offspring of an incomplete diallel of 18 tetraploid potato breeding clones.
The panel consists …
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Hi,
I'm running the following code from Rstudio:
ld_folder="~/data/dms-gwas/opt/gctb_refs/LD_Reference/ukbEUR_Imputed"
for (pheno in c("test")) {
ma_file=paste0("~/data/dms-gwas/sumstats/B…
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Hello, sorry to bother you. Currently, I’m using the command `bcftools view -m 2 -M 2 --threads 4 -Ob -o referencePanel.22.bcf referencePanel.vcf.gz` to process my data. My file `referencePanel.vcf.gz…
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Hello! How can I use the Beagle tool to process a VCF file? I encountered the following error, for example:
`ERROR: duplicate allele at chr1:1819706 [T, , ]`. Also, can Beagle handle data similar t…
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Hi Armando and all,
The provided example.ped and .map worked beautifully. However with my own data set, I am constantly facing the error 'Too few bins' despite altering to even NGEN=200, NBIN=200.…
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I'm working on the main branch (commit c5190c07aa8da7436760f39bb5de8e27afb44844).
I'm attempting to run the `rust_hello_world_trusted_bundle` container using the following command:
```
sudo RUS…