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**Is your feature request related to a problem? Please describe.**
I had the request to install Sopa for the sincellte course (it should tell you something @quentinblampey ? 😉)
We only support Conda…
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Hi Quentin,
we talked a little bit about this in Munich.
I think this might be more noticeble in our samples as we are working with big cells:
![grafik](https://github.com/user-attachments/assets/c…
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Dear @quentinblampey
I am in the process of changing the provided Snakefile to run many samples (images) at once.
I am replacing the inputs and outputs paths to include the {sample} wildcard.
I …
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## Description
Snakemake doesn't correctly recognise the number of threads from the `cluster` command in the slurm config yaml. The `provided cores` shows as 1.
https://github.com/gustaveroussy/so…
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Dear Developer,
I'm trying to use the sopa to output the xenium file, so I can open it with xenium.
but I got the error said no cell circles, I actually have this one in my spatialdata (pelase c…
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Hello to the SOPA creators.
I am quite a beginner to Python and the Command Line Interface. I have attempted to run the Ready made Snakemake pipeline for Xenium data (with the Baysor cell segmentat…
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Dear
How to change the device name by windows without ROS ?
Please share the method.
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From Wei Song
Allowing the user to have flexibility and choose different bioinformatics tools, for example, between SOPA and SPARROW, to ensure the robustness of the analyzed results.
(from me n…
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HI,
I'm using comseg (sopa segmentation comseg xxx) and got this error.
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Hi,
I want to use cellpose cell segmentation results in QuPath, I have found a script to transfer cell masks from one image to another in [here](https://forum.image.sc/t/qupath-transferring-objects…