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Hello,
In the version 1.9.2, i have this error message :
"WARNING: it is strongly recommended to first generate an in silico-predicted library in a separate pipeline step and then use it to pr…
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I've been having trouble running my DDA and DIA files in MSFragger using the MSFragger-DIA workflow. The issue seems to be with the mzML DIA files. I've been discussing this on the Fragpipe and openms…
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### Basic information
* My operating system and version:
* Linux
* My mzmine version:
MZmine/3.9.0
### What happened
We have problems to include the MS-MS libraries of Pubchem in json form…
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For a user provided spectral library, how does DIA-NN select fragment ions in the library for peptide detection?
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Hi Vadim,
I hope you're doing well. I'm encountering an issue while running DIANN on a Linux-based HPC cluster. Occasionally, the analysis crashes with the following error:
Segmentation fault (c…
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Hi,
Is possible to create one spectral library from more than one organisms? My samples consists from 2 different organisms (plant-fungi), so I want to create one spectral library and then to make my…
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Unify the import and export of spectral profiles into / from spectral libraries
- import ASD, SED, SVC and EcoSIS csv files
- unify field names for common attributes like reference and target prof…
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Hi,
Thank you so much for creating DIA-NN. I am new to this tool. I was trying to generate a predicted spectral library from a FASTA file. According to the GUI of DIA-NN, I should get a spectral li…
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Hello,
First, thank you for this fantastic resource!
I do have a question- I am working with a label I have developed for derivatizing arginine, and used it as a variable modification to build a…
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Hello! I am running DiaNN 1.8 on Windows and I noticed something odd, and I was wondering if there was an explanation for it. I basically have two runs.
All in One: Running all the samples at once …