-
```
I tried to install TREEMIX in my LINUX system (Fedora15).
After following ./configure, make and make install (through root), I did not
see treemix executable file to run the program.
Can you ple…
-
```
Hi All,
I've got problems when compiling treemix. I tried it in two ways:
1) Used Intel C++ Compiler 12.0 and Boost 1.49 compiled with icc. When
compiling tree mix 1.03 I receive the following …
-
```
What steps will reproduce the problem?
1.Making the input format file (custom java script)that takes my vcf file, and
a file with the samples IDs and its corresponding populations and make the
…
-
```
Hi,
I'm having trouble configuring treemix-1.12. I've got GSL-1.16 and Boost-1.55.0
installed and when I run ./configure for treemix I get the following error:
checking for g++... g++
checking …
-
```
I tried to install TREEMIX in my LINUX system (Fedora15).
After following ./configure, make and make install (through root), I did not
see treemix executable file to run the program.
Can you ple…
-
Hello,
I ran the program using denovo assembly strategy and then using a genome as a reference. For the first one, ipyrad generated 18 output files. However, when I used the genome, it only generat…
-
Hello! I'm using your vcf2treemix script but when I add the root flag, I get the error message
```./vcf2treemix.sh species_group_1_H1_11_31_2_S173_L002_noNa.treemix.vcf.gz feild.clust```
```#run tr…
-
It'd been pointed out that other tools like
- ADMIXTOOLS (or, the frontend admixr)
- treemix
report statistics (eg f3) calculated from only polymorphic sites instead of the whole genome as we do.…
-
I am running both TreeMix and OrientAGraph on a dataset that includes populations from two outgroup species. Using TreeMix, setting `-root out1,out2` works. However, using OrientAGraph, using `-root o…
-
```
Hi All,
I've got problems when compiling treemix. I tried it in two ways:
1) Used Intel C++ Compiler 12.0 and Boost 1.49 compiled with icc. When
compiling tree mix 1.03 I receive the following …