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Hi Charles, I watched your 4 Wiggle tutorial videos. Fantastic! You are joking about combining efforts, my own ChimeraX cryoDRGN viewer prototype hardly does anything while Wiggle is ready for use. …
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Hi development team,
Several programs opened in SWLg have an operation issue: their popup sub-window is frozen and blocks the main window.
For instance, UCSF ChimeraX and WPS Office. If people op…
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Hi all,
I detected a potential bug. SES surface (Solvent excluded surface) looks exactly the same as the SAS (solvent accessible surface). Reproducible in http://nglviewer.org/ngl/ molecular surfac…
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I use alphafold2 by connecting it to a local machine via jupyter notebook. The machine has ubuntu 22 nvidia 4090 with a working cuda driver 535. I have a very urgent project and cannot wait for my Uni…
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.... and that maybe fine.... If you decide this is of no interest, that is very helpful too!
Details:
Structures Models of long transcripts (like Human gene TTN with over 30,000 residues) need…
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I was mutating a structure using the Rotamer tool on ChimeraX. I mutated a single amino acid (Tyrosine) to a Proline using the Richardson Common Atom library. However, when I ran AlphaFold on it, the …
n1812 updated
5 months ago
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I saved a .cif file with ChimeraX and NGL Viewer won't display it. The web-debugger showing:
The javascript level error I see in firefox debugger from NGL Viewer is:
"Uncaught (in promise) Ty…
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We recently switched from PDB > CIF with two main motivations:
- store metrics (like pLDDT) without abusing b-factor, and hopefully store pairwise interaction metrics as well (PAE etc)
- better c…
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Hey @tomgoddard ,
There is a parameter "ss" as secondary structure specifier to select only the provided secondary structure amino acids for model making. How can i integrate it with the command li…
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Hello, I was wondering if this works for ChimeraX, the predecessor for Chimera, as well? If so, is the installation method the same?