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Currently, this page is called `bianca_workshop` (i.e. singular).
However, recently, it was decided to split the one Bianca workshop into two.
I suggest to
* either rename this repo to `bi…
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Use workshops or community calendar: https://github.com/coderefinery/calendar/blob/main/calendars/workshops.yaml
- [ ] - [ ] https://scicomp.aalto.fi/training/scip/ttt4hpc-2024/
- [ ] https://ssl.eve…
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Dardel is a PDC system not an UPPMAX one. We have have to provide some Dardel-related documentation to assist migration, but I don't think Dardel should be in the menue with our own systems. Maybe hav…
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If we decide upon evaluating the Bianca Intermediate course (#28), I suggest to discuss how to do so: I've seen meeting of 90 minutes that went though the learners' feedback one-by-one without prepara…
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## Input specifications
To skip the qc and assembly step we can provide the assemblies and reads used to generate the assemblies in a CSV file together with a CSV file specifying the reads.
The asse…
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### Description of the bug
I was running Sarek for about 100 samples, and I ran out of disk quota at some point. After free up more space on the cluster (Uppmax), I `-resume` the previous run, but I …
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Custom configs are now hosted centrally at `nf-core/configs`. We need to think about where we host the documentation for running these config files. These are currently added on a per-pipeline basis b…
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### Pipeline Scripts
- [ ] Process basics (input / output / script, channel types, output patterns, `tag`)
- [ ] Use of `params` (mention need for explicit defaults)
- [ ] Paired end inputs (`FromF…
ewels updated
7 years ago
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Should all data be displayed in one table or in several ones?
Currently there are several datasets at https://export.uppmax.uu.se/snic2022-23-113/datasets/
Will there be one csv file for all metad…
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**Describe the issue**
The `modules.config` for DECONTAMINATE:FCSGX_RUNGX has cluster options specific to the Uppmax config. This should be moved to uppmax profile.