NBISweden Earth-Biogenome-Project-pilot issues

NBISweden / Earth-Biogenome-Project-pilot

Assembly and Annotation workflows for analysing data in the Earth Biogenome Project pilot project.

https://www.earthbiogenome.org/

GNU General Public License v3.0

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issues

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Add parameter to make organelle assembly optional

#115 mahesh-panchal opened 1 day ago
0
Add function explanations

#114 mahesh-panchal closed 1 week ago
0
Make execution report default

#113 mahesh-panchal closed 1 week ago
5
Update meryl/count to latest module version

#112 mahesh-panchal closed 1 week ago
0
increase proportion of jobs to shared

#111 mahesh-panchal closed 2 weeks ago
1
Update purgedups

#110 MartinPippel closed 2 weeks ago
0
Move Rackham specific cluster options to Uppmax profile.

#109 mahesh-panchal closed 3 weeks ago
1
Add fallback for no ToL ID

#108 mahesh-panchal closed 2 weeks ago
1
No ToLID for my species

#107 Estel-Kitsune closed 2 weeks ago
0
Add Dardel profile

#106 mahesh-panchal closed 2 weeks ago
7
Use channel helper in Purge dups workflow

#105 mahesh-panchal closed 1 month ago
3
Update Mermaid diagram and assembly input

#104 mahesh-panchal closed 1 month ago
0
Something went wrong while creating task 'ASSEMBLY_REPORT:REPORT_DTOL' unique id

#103 mahesh-panchal closed 2 weeks ago
1
Integrate FCSGX ramdisk, Reporting, Meryl and Merqury modules, and refactor workflow

#102 mahesh-panchal closed 1 month ago
0
Report Integration

#101 mahesh-panchal closed 1 month ago
0
error polishing subworkflow based on DeepVariant

#100 MartinPippel closed 1 week ago
0
nf-core modules ploidyplot module has spelling mistake in channel names

#99 mahesh-panchal closed 2 weeks ago
1
optimize PURGEDUPS_SPLITFA process

#98 MartinPippel opened 1 month ago
1
Update README.md

#97 gbdias closed 2 months ago
0
Refactor workflow

#96 mahesh-panchal closed 2 months ago
7
Test data - Drosophila melanogaster

#95 gbdias opened 2 months ago
2
FCS_GX on dev failed

#94 gbdias opened 3 months ago
7
Purgedups handle multiple input read files

#93 MartinPippel closed 3 months ago
0
Check if GOAT API is easier to parse out then GOAT cli

#92 mahesh-panchal opened 3 months ago
0
Fix stats

#91 mahesh-panchal closed 2 months ago
0
Dot plots of putative mitogenomes vs final mitogenomes

#90 mahesh-panchal opened 3 months ago
0
Assembly summary does not contain any assembly stats (N50, length, base composition, etc)

#89 MartinPippel closed 3 weeks ago
1
Automated codon usage table selection

#88 mahesh-panchal opened 3 months ago
0
Add errorStrategy ignore to Mitohifi

#87 mahesh-panchal closed 4 months ago
0
Alternative mitogenome strategy needed when MitoHifi fails.

#86 gbdias opened 4 months ago
8
Busco doesn't exit with an error when one of the subtools is killed, or print a suitable error message

#85 mahesh-panchal opened 4 months ago
0
Is it better to Kmer count the combined fastq or the parts?

#84 mahesh-panchal opened 4 months ago
1
MultiQC report

#83 mahesh-panchal opened 4 months ago
1
Large memory node needed for certain processes

#82 n-equals-one opened 4 months ago
2
Out of memory kill issued by slurm but Nextflow process marked as completed.

#81 mahesh-panchal opened 4 months ago
0
Error executing process > 'FCSGX_RUNGX (hifiasm-decontaminated-default-hap0)'

#80 Estel-Kitsune closed 4 months ago
3
Add timestamp to trace

#79 mahesh-panchal closed 4 months ago
0
New Module: Klumpy

#78 mahesh-panchal opened 4 months ago
0
Add TaxId and FCS workflow

#77 mahesh-panchal closed 4 months ago
0
New Module: TIPP_plastid (chloroplast assembly)

#76 mahesh-panchal opened 4 months ago
0
New Module: Hostile

#75 mahesh-panchal opened 5 months ago
0
New Module: PGAP

#74 mahesh-panchal opened 5 months ago
0
New Module: teloclip

#73 mahesh-panchal opened 5 months ago
0
Pipeline fails on "PREPARE_INPUT:GOAT_TAXONSEARCH" because of missing taxon identifier

#72 n-equals-one closed 6 months ago
1
New Module: OMArk

#71 mahesh-panchal opened 6 months ago
0
Question: How to run EVALUATE_ASSEMBLY process without the 'assemble' step

#70 gbdias closed 6 months ago
2
New Module: Taxon Kit

#69 mahesh-panchal opened 7 months ago
0
Updates

#68 mahesh-panchal closed 5 months ago
0
Pipeline fail at BUSCO and PURGE_DUPS

#67 gbdias closed 7 months ago
5
Next update

#66 mahesh-panchal closed 7 months ago
0