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NBISweden
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Earth-Biogenome-Project-pilot
Assembly and Annotation workflows for analysing data in the Earth Biogenome Project pilot project.
https://www.earthbiogenome.org/
GNU General Public License v3.0
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Hifiasm missing p_ctgs in output.
#65
gbdias
closed
7 months ago
2
Add GOAT, HIFIASM concurrent, updated meta map, updated tools
#64
mahesh-panchal
closed
7 months ago
0
Update mermaid diagram
#63
mahesh-panchal
closed
8 months ago
0
New Module: DNAapler
#62
mahesh-panchal
opened
8 months ago
0
New Module: Telomere Identifier
#61
mahesh-panchal
opened
8 months ago
0
New Module: CRAQ
#60
mahesh-panchal
opened
8 months ago
2
Dardel profile
#59
mahesh-panchal
closed
3 weeks ago
0
New Module: GOAT
#58
mahesh-panchal
closed
7 months ago
0
Merge dev to main.
#57
mahesh-panchal
closed
8 months ago
0
Update nextflow.config
#56
mahesh-panchal
closed
8 months ago
0
Update purgedups
#55
mahesh-panchal
closed
8 months ago
0
New Module: OMArk
#54
gbdias
closed
8 months ago
2
Custom classes to properly maintain metadata
#53
mahesh-panchal
closed
7 months ago
1
Reporting a warning when below coverage for GenomeScope and Smudgeplot
#52
mahesh-panchal
opened
9 months ago
0
Test Data - Amphimallon solstitiale
#51
mahesh-panchal
opened
9 months ago
0
Test Data - Laetiporus sulphureus - Chicken of the Woods
#50
mahesh-panchal
opened
9 months ago
1
New Module: PretextMap
#49
mahesh-panchal
opened
9 months ago
0
New Module: Shasta
#48
mahesh-panchal
opened
9 months ago
0
New Module: Pairtools
#47
mahesh-panchal
opened
9 months ago
0
New Module: HiFiasm
#46
mahesh-panchal
closed
7 months ago
2
New Module: GFAstats
#45
mahesh-panchal
closed
8 months ago
0
New Module: FCS Decontamination
#44
mahesh-panchal
closed
4 months ago
1
Output report discussion
#43
mahesh-panchal
opened
10 months ago
7
Structured Output Folders
#42
mahesh-panchal
opened
10 months ago
20
params.yml template doesn't exist
#41
aersoares81
closed
10 months ago
1
Add TODO statements to mark work to be done
#40
mahesh-panchal
closed
1 year ago
0
Repair last update
#39
mahesh-panchal
closed
1 year ago
0
Update README.md
#38
mahesh-panchal
closed
1 year ago
0
Path to params.yml template is broken
#37
aersoares81
closed
1 year ago
1
Add Star align
#36
mahesh-panchal
closed
1 year ago
0
MitoHiFi module
#35
verku
closed
10 months ago
7
Purge dups
#34
mahesh-panchal
closed
1 year ago
0
Fix metadata joining issues
#33
mahesh-panchal
closed
1 year ago
0
New Module: Charcoal
#32
mahesh-panchal
opened
1 year ago
1
New Module: Asset
#31
mahesh-panchal
opened
2 years ago
0
New Module: PurgeDups
#30
mahesh-panchal
closed
7 months ago
3
New Module: MitoHiFi
#29
mahesh-panchal
closed
7 months ago
3
New Module: Verkko
#28
mahesh-panchal
opened
2 years ago
1
New Module: Yahs
#27
mahesh-panchal
opened
2 years ago
1
Support alternate asm
#26
mahesh-panchal
closed
2 years ago
0
Update module configuration
#25
mahesh-panchal
closed
2 years ago
0
Upgrade k-mer profiling with FastK, GeneScope2, and MerquryFK.
#24
mahesh-panchal
closed
2 years ago
1
Circos plot to visualize before and after curating.
#23
mahesh-panchal
opened
2 years ago
0
What analyses should be run on the various states of assembly.
#22
mahesh-panchal
opened
2 years ago
4
New Module: La Jolla Assembler
#21
mahesh-panchal
opened
2 years ago
0
New Module: HiFiAdapterFilt
#20
mahesh-panchal
opened
2 years ago
0
What are the “streaking” artefacts in the Hi-C contact maps?
#19
mahesh-panchal
opened
2 years ago
0
How to flag mitochondrial or chloroplast contigs?
#18
mahesh-panchal
closed
7 months ago
1
When should we classify a scaffold as a chromosome?
#17
mahesh-panchal
opened
2 years ago
0
How should we treat non-"chromosomal" contigs?
#16
mahesh-panchal
opened
2 years ago
0
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