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Dear developer,
I want to convert the GAM to BAM format via VG surject command, but it failed because of the different attributes between GraphAligner and vg aligner. The differences are shown be…
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**1. What were you trying to do?**
I want to convert a gbz pangenome graph (created using cactus-pangenome) into xg format.
```
vg convert -x canidpg.gbz > canidpg.xg
```
**2. What did you wa…
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Hi, thanks for your great work! Now I'm trying to evaluate model on VG dataset but meet some problems.
1. Only one file named `vg_stage1_predcls.zip` in the provided link in [Evaluation](https://gith…
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### For all branches based on main
In FLHET_compiled.py,
in
_362_ def SetInlet(...):
...
_368_ U_ghost[0] = (mdot - M * P_In[1] * P_In[2] **/ VG**) / (A0 * VG)
…
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Hi,
when i used the vg call to obtain the genotype file from short reads. I didn't know these genotype. for example,1/1,1/0,0/1 . These genotype were not including 0/0?
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**1. What were you trying to do?**
Dear vg team,
Thank you for the great program.
FYI,
minigraph v0.21 (https://github.com/lh3/minigraph)
vg v1.56.0 (https://github.com/vgteam/vg)
vcf…
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I have my node up and running (v1.110.3) and I’m using the built in /metrics endpoint. The issue I’m seeing is duplicate metrics. TSDB can't add metrics with identical timestamps, names & labels but…
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I had to turn off multithreaded GAM read because this would break on Mac:
```
vg construct -r test/1mb1kgp/z.fa -v test/1mb1kgp/z.vcf.gz > z.vg
vg sim -n 10000 -s 23 -a -x z.vg > sim.gam
# This fails
…
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From :
I would like to load data using DuckDBClient.sql() and display with vgplot. I am able to do this with Observable Plot:
````
```js
const sql = DuckDBClient.sql({ rand: FileAttachment("./…
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**1. What were you trying to do?**
Run `vg call` to genotype sample
**2. What did you want to happen?**
Output a valid VCF
**3. What actually happened?**
The alternative allele is m…