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maickrau
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GraphAligner
MIT License
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How to add read quality scores back into GAM
#107
BaxW
opened
4 days ago
0
GraphAligner slow on R10 reads mapped to hprc graph
#106
xchang1
opened
6 days ago
0
GraphAligner closes named pipe (feature request)
#105
nrizzo
opened
1 month ago
2
Unable to reproduce alignment speed in the GraphAligner publication
#104
jzhang-dev
opened
1 month ago
0
Update CondaEnvironment_osx.yml
#103
pickettbd
closed
3 months ago
0
What's the difference between "iterateMinimizersSimple" and "iterateMinimizersReal" in /src/MinimizerSeeder.cpp
#102
YellowJason
closed
3 months ago
1
Custom seeds in GAF format
#101
nrizzo
opened
4 months ago
0
Assertion Error: seq.size()>=1
#100
hangsuUNC
closed
5 months ago
1
Aligning HiFi reads to the assembly graph generated by flye
#99
Wenfei-Xian
closed
6 months ago
1
Does GraphAligner only use defined links to align across contigs
#98
Adamtaranto
opened
8 months ago
2
Convert alignments to GFA Path lines
#97
Adamtaranto
opened
8 months ago
2
multiple mapping
#96
yjk-bertrand
opened
8 months ago
0
How to get the unique matching path for each read
#95
xujialupaoli
opened
8 months ago
6
How do I use the diploid heuristic?
#94
JingaJenga
opened
10 months ago
2
Incorrect alignments, assertion errors with --seedless-DP when read has a mismatch in the first base
#93
shenker
opened
1 year ago
0
Allow compilation with latest dependencies from conda-forge
#92
shenker
opened
1 year ago
1
Several issues about installsion version,compile,and assertion.
#91
linsindian
opened
1 year ago
0
Assertion issue
#90
asylvz
opened
1 year ago
3
Alignments jumping haplotype?
#89
skoren
opened
1 year ago
0
Are the “name” field and "node_id" field reversed?
#88
tanger-code
closed
1 year ago
8
Doesn't GraphAligner support `.vg` graph?
#87
tanger-code
opened
1 year ago
5
unmapped reads
#86
asylvz
opened
1 year ago
1
How to map node id to corresponded allele id?
#85
yipukangda
closed
1 year ago
1
Read quality in gam output
#84
shenker
closed
10 months ago
0
Alignment error
#83
GeorgeBGM
opened
1 year ago
4
GAM surject incompatible with VG
#82
jiadong324
opened
1 year ago
3
converting .gaf alignment to sequence
#81
dcopetti
closed
1 year ago
2
Optimal alignment
#80
abanerjee10
closed
1 year ago
2
short reads / end to end
#79
colindaven
closed
1 year ago
2
Expected alternative alignment not shown
#78
JianjunJin
opened
1 year ago
4
Bug report: option parsing error
#77
JianjunJin
closed
1 year ago
2
Alignment traceback error
#76
tobiasrausch
closed
1 year ago
2
Multiple alignments for input reads
#75
glennhickey
closed
1 year ago
4
gaf format error in some case
#74
zhangyixing3
closed
1 year ago
2
vg validate says that gam file produced by GraphAligner is invalid
#73
rvarki
closed
1 year ago
4
Memory and threads suggested - Core dump when building minimizer seeder from the graph
#72
lingliao
opened
1 year ago
8
Can we add python to the docker image graphaligner
#71
lingliao
opened
1 year ago
0
Cannot compile with conda
#70
baozg
closed
1 year ago
3
Assertion failed
#69
tprodanov
closed
1 year ago
2
GraphAligner fails with large number of threads
#68
TanyaDvorkina
opened
2 years ago
3
Assertion 'previous.node(neighbor).endSlice.scoreEnd >= scoreHere-(eq?0:1)' failed.
#67
ykkim0127
closed
1 year ago
2
Change match/mismatch/gap scores
#66
alexandrumeterez
closed
2 years ago
1
unspecified edge overlaps error
#65
brianabernathy
opened
2 years ago
4
CondaEnvironment_osx.yml hardcodes x86_64-specific versions of dependencies
#64
asl
opened
2 years ago
4
equivalent alignments with version 1.0.16
#63
ZHU-XU-xmu
opened
2 years ago
0
Error related to protobuf in installing GraphAligner
#62
wzboy1984
closed
2 years ago
2
Mapping long reads to HGSVC graph
#61
jiadong324
closed
2 years ago
2
Mapping long reads to whole genome
#60
champ1994
opened
2 years ago
2
Finding % mapped reads with GraphAligner
#59
gsc74
opened
2 years ago
1
No alignment to de Bruijin Graph
#58
khodor14
opened
2 years ago
0
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