-
Hello,
I am trying to use BS Seeker 2 to make an index of the Bovine Reference Genome for later alignment with WGBS data.
I ran the code:
python bs_seeker2-build.py -f ~/reference/file/locatio…
-
Bug in R-Script coveragePlot.R, finishes with error:
```
Error in axis(1, at = pretty(c(0, nrow(sampleOneCon[[i]]))), labels = paste(pretty(c(0, :
'at' and 'labels' lengths differ, 8 != 5
Execu…
-
**Describe the bug**
At the wgbs.map step, I get a TypeError:
> ==== NAME=wgbs.map, STATUS=Failed, PARENT=
> SHARD_IDX=1, RC=1, JOB_ID=9608
> START=2021-10-15T03:04:21.289Z, END=2021-10-15T03:09…
-
I am trying to use `uxm deconv` with my own data after making sure the program works with the tutorial data. I get the following error:
```
uxm deconv tmc-110_WGBS.sorted.dedup.STRIPPED.pat.gz -o…
-
### Hi, please I need help with this issue:
```sh
[7e/d74203] NOTE: Process `WGBS:erne_bs5 (SRR5526174)` terminated with an error exit status (127) -- Execution is retried (1)
[47/8108ab] NOTE:…
-
Hello everyone!
My Name is Azlan and i am currently analyzing our ONT Data. I wanted to use uxm and wgbs_tools to further investigate the methylation status in different samples and just wanted to…
-
hello! thanks for building this tools! I met some problems when I try to deal with my WGBS data.
I tried to run wg-blimp from config file, but I went some error, it cannot be run successfully.
t…
-
**OS/Platform**
- OS/Platform: Ubuntu 20.04.3 LTS
- Conda version: conda 4.11.0
- Pipeline version: v1.1.8
- Caper version: v2.1.3
**Caper configuration file**
```
backend=local
# Ha…
-
My code is the following below:
#---------------------------------
bsmap -a /public/workspace/huangbin/WGBS/1.rawdata/M_FDLM210080249-1a/M_FDLM210080249-1a_1.fq.gz \
-b /public/workspace/huangbin/W…
-
Hi,
How can I normalize my smooth data?
Thank you for the help,
Priya