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I am rerunning a dataset done with an earlier version of Roary, now with 3.5.8, and suddenly it refuses to do the whole set (497 genomes) with the -i 90 or higher setting. It works fine until the gene…
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We may want to add terms for the morphology of left and right lungs and child terms for the lobes of the right lung.
abnormal left lung morphology
def any structural anomaly of the organ of respi…
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I have Muscle and revtrans.py (v1.4) installed and in the PATH, but the .aln file produced contains only N's. The GFF's are from Prokka and work fine for creating the gene lists, but somewhere it goes…
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For a phylogeny run the *CoverMatrix.csv and *GeneSummary.csv files are duplicates of each other (identical md5sums).