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## Description
As a bioinformatician, I would like to be able to run Screw on an example real-world data set (e.g. Farlik 2016 data), in order to see the results, and to see how to use Screw in pra…
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https://doi.org/10.1007/s40005-017-0332-x
> Deep learning is a new machine learning paradigm that focuses on learning with deep hierarchical models of data. Chemoinformatics has been defined as the…
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__The goal of this task is to combine what I have learned from the previous genome assembly assignments to create a single script that assembles, evaluates, and annotates three different genome assemb…
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As of this writing, https://greenelab.github.io/deep-review/ shows 18 remaining TODOs. I'm skipping those that I can work on myself or have open pull requests to address them.
For the rest, can th…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/BioinformaticsFMRP/TCGAWorkflow
Confirm the follo…
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Hi,
I'm trying to install Giggle on MacOsX. I went through the test procedure, and I had several blocks/errors:
- upon running `giggle_tests.sh`:
```
/usr/local/bin/bedtools
check_intersecti…
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Without loading the huge motifs intervaltrees into memory each time.
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## Description
As a bioinformatician, I would like to download the single cell methylation data produced in Farlik et al. (2016) from the Gene Expression Omnibus, in order to facilitate downstrea…
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It looks like it's possible to set up quay.io to rebuild the image based on a Github repo. @neksa, you could do this, but it might be easier if you set me as admin on the https://quay.io/repository/ne…
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Hello,
Thanks for LOLA! It looks like a great resource.
I get this error when trying to load the latest LOLAExt cached database:
``` r
> regionDB2