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Hello,
I am using GATB and creating the graph as:
`gatb::core::debruijn::impl::Graph::create("-in %s -kmer-size %d -abundance-min 0 -out %s/graph -nb-cores %d", readsFile.c_str(), kmerSize, outp…
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Hi,
I am trying to compile bcalm on my Surface Pro. I am using cygwin64 and gcc 5.4. I got a bunch of warnings while running cmake and running the Make command resulted in errors. All the errors we…
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## Version of bioconvert
…
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Hi,
as stated in the object of this issue, bcalm outputs some wrong links in the FASTA headers when running with multiple threads.
For example, when running with 4 threads bcalm outputs the followin…
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@blaiseli
You mentionned
"Regarding the md5 sum for the test fasta file, we shouldn't have a fasta file where headers are introduced by "@" instead of ">".
For now, interestingly, biopytho…
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I was trying to install libtorrent-rasterbar. I've successfully installed it before, not sure why it doesn't work now.
The exact copy-paste from command to error on Terminal:
```
$ brew install l…
ghost updated
6 years ago
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1. Include the https://github.com/pierrepeterlongo/commet/blob/master/src/extract_reads.cpp tool in order to extract reads from .bv files.
2. Provide to way to create a .bv from a SRC counter or l…
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Hello,
we tried to start the application with the following command:
./bft build 27 ./list myOut
the file ./list has following content:
~/Downloads/Homo_sapiens.GRCh38.dna_rm.toplevel.fa Human…
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How would we convert a fastq.gz to fasta.bz2 using the actual framework ?
```
fastq.gz to fastq -> fasta -> fasta.bz
```
This would not be efficient. How to use the pipe framework ?