-
Hi, I applied this tool to a big public dataset and successfully got outcomes among several cell types.
My successful step1 command is like
Rscript /home/users/scratch/qtl/extdata/step1_fitNULLGLMM…
-
Hello! I am currently working on eQTL fine-mapping analysis with susieR. I have already mapped eQTLs and performed conditional eQTL mapping with QTLtools, which provided me the summary statistics dat…
-
Hi,
Can I change the colours used for plotting 1) genes and 2) the r^2 of the variants?
Thanks
Sander
-
Hello,
So I have the script for getting both synonymous and misense variants fom VCF file.
Now I wonder, how to input these results from many genes into ProxECAT vector? How should input file look l…
-
How could I know the number of variants and genes in the mashr_Brain_Spinal_cord_cervical_c-1.db?
-
Hello, My config contains the following lines:
```
GENETIC_CODE_TABLE=1
GENETIC_CODE_TABLENAME=Standard
MITO_GENETIC_CODE_TABLE=2
MITO_GENETIC_CODE_TABLENAME=Vertebrate Mitochondrial
PARENT_DI…
-
We have a number of variants at the intron/exon or exon/intron boundary that return no protein change that we believe should be treated as coding because the splice site & region remain completely int…
-
We need a final list of features for the December release and the list of features that we could implement in the future.
@xyg123 could you please share the google sheet we discussed with features f…
-
We (Lund) suggest two additional External Links for variants pages (Clinical SNV and INDELs).
1. Decipher: Clinical-info page for genes e.g. https://www.deciphergenomics.org/gene/POLR3B/overview/cl…
-
The HGVS nomenclature now recommends including both a sequence and transcript identifier for some variants, with the transcript identifier in parentheses e.g.: https://hgvs-nomenclature.org/stable/rec…