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Hello,
I used Novoplasty on metagenomic data. I used this file as a configuration file:
============
Project:
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Project name = MS_assembly_chloroplast
Type …
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I found issue #521 but none of the tips there helped in my case.
I am trying to run bactopia on WSL + Ubuntu, fresh install. Installed MambaForge as per the installation instructions, then installed …
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I would like to bring up the issue again to include partial genes. See the pull request (#37) from @lguy where he implemented it.
I think it would be good for draft genomes and even more for highly fr…
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Dear Nicolas,
Just a follow up question for the issue #216
How do I know the right % of mtDNA reads of the total sequence reads that mapped to the whole mtDNA? I'm doing a comparison between the…
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Making vg seems to work but constructing a vg fails directly with "Illegal instruction (core dumped)".
Also tried 'make' in vg/test fails with most separate tests failing.
in vg/test/small/ also "..…
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Here is a list of aligners that are made for long reads, add yours and see if we can come up with a unified way to use them?
https://github.com/ocxtal/minialign
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[NOTE] calling consensus sequence between anchors...
terminate called after throwing an instance of 'std::bad_alloc'
what(): std::bad_alloc
Compute resource seems to be ample from a memory per…
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I am assembling turtles mitogenomes and in some cases the output I obtain is a "Circularized genome", actually made up of 2 non overlapping contigs: in all these cases, the interruption is in correspo…
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Now I'm using the whole data set, as opposed to a subset, and getting err code -11. Thank you and is there a way that I could look these up?
```bash
Command line: ./spades.py --pe1-1 /var/lib/cond…
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Hello,
is Racon expected to work for such genome?
I ran, using PE illumina mapped with bwa mem2
`racon -t 48 illumina.fq mapped.sam raw.fasta > racon.polished.fasta`
the resulting fasta ha…
ghost updated
5 years ago