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Hi,
So far I have been using the default database that comes bundled with Gimmemotifs, which is quite alright for most purposes. However, Jaspar 2018 has just been released and I wanted to repeat s…
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I would like to be able to run cascaded clustering with explicitly defined sensitivity levels, and also disable the first Linclust step. Can this be done somehow?
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Hello I have been trying to run MoSEA/mosea.py scan on the test files and I get this error.
python MoSEA/mosea.py scan --pfm --pfm_path MoSEA/test_files/motifs/pfms/ --fasta fafile_reg --out_dir fmo…
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Paper: https://www.nature.com/articles/ng.3862
Lots here to capture, someone will need to get into the supplemental data and try to track some of this down.
- Genome and annotation - 391 Mb of …
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### New Issue Checklist
- [x] The title is short and descriptive
- [x] The issue contains an:
- [x] Idea (new feature, user story, etc)
- [ ] Problem
- [x] You have explained the:
- [x] Co…
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(Please use for Q&A)
**Describe the bug**
I have following code, I have run it in "multicore" with `workers` equal to 1 or 2.
```
future::plan("multicore", workers = 2)
biomisc::run_absolute(
…
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I am unable to buildDB, initially I suspected it was because the fna files were gunzipped but after un-gzipping them, a new issue arose.
I used the following commands to download a smaller version …
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```
Hi:
I think this is more of a feature request, though I believe it would be very
helpful to the community.
It would be nice if the --sorted option worked on all sorted files, no matter
the orde…
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Hello, I am following the pipeline of finding alternative splicing analysis using QoRTs and JunctionSeq.
I am working on tomato rna-seq data
I have used HISAT2 for alignment and used "--minMAPQ 60".…
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