DiltheyLab MetaMaps issues

DiltheyLab / MetaMaps

Long-read metagenomic analysis

Other

96 stars 23 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

plotIdentities_EM.R 'Genome-wide coverage over all contigs' read count inaccurate for pages with multiple mapping units being plotted.

#79 Kamranaway opened 4 weeks ago
0
plotIdentities_EM.R minimum frequency not working as intended

#78 Kamranaway opened 1 month ago
0
Docker/Singularity

#77 ZYF1997CN opened 1 month ago
0
boost_math_c99 compiling error

#76 albenstein opened 3 months ago
0
Custom Database creation for one species

#75 wangqi0000 opened 9 months ago
2
Custom Database creation

#74 sum732 opened 11 months ago
6
Repo is missing R script plotIdentities_EM.R

#73 mhajimorad closed 11 months ago
1
Script filterLowIdentityEntities.pl dies prematurely

#72 mhajimorad opened 11 months ago
3
terminate called after throwing an instance of 'boost::wrapexcept<std::logic_error>'

#71 self-Shubham opened 1 year ago
3
MetaMaps no longer supported?

#70 julianzaugg closed 11 months ago
1
regex_search failed while running classify

#69 dawnmy opened 1 year ago
1
Running problems of metamaps: Assertion `statsStream.is_open()' failed.

#68 wangqi0000 closed 11 months ago
1
Can a database be added via shared memory?

#67 jsonProgram closed 11 months ago
2
Presence of carrier return line endings in Perl utilities

#66 nsmro closed 11 months ago
1
Assertion failed: (abs(1 - f_sum) <= 1e-3 during classification step

#65 jflot opened 2 years ago
1
Cannot open DB.fa for size determination

#64 wangtao0000 closed 11 months ago
1
Misclassification when close relatives are present

#63 ana-re opened 2 years ago
1
Build reference database from GTDB

#62 aditi48n closed 11 months ago
1
percentage identity and coverage info - misclassification

#61 molbio7 closed 11 months ago
1
Unable to multi-thread MetaMaps (installation issue?)

#60 FabbriniMarco opened 3 years ago
2
Error downloading RefSeq - provide prebuilt db for RefSeq archaea, bacteria, fungi?

#59 dportik opened 3 years ago
3
Error when using mapDirectly

#58 m-crown closed 11 months ago
1
Percentage identity and mapping quality question

#57 maguileraf closed 11 months ago
2
What is the miniSeq+H based on (when was the refseq genomes downloaded)?

#56 dawnmy closed 11 months ago
2
metamaps classify error

#55 khoriba closed 11 months ago
1
downloadRefSeq.pl fails

#54 khoriba closed 11 months ago
1
Mapping step spent very long time is normal?

#53 J-I-P closed 11 months ago
2
Update combineAndAnnotateReferences.pl

#52 pad1989 opened 3 years ago
0
convert metamaps results to kraken style report - question

#51 molbio7 opened 3 years ago
4
why is the taxonID negative?

#50 WDH1999 closed 11 months ago
1
Unable to buildDB

#49 Electrocyte opened 3 years ago
20
Problem at the classify step

#48 ecollette opened 3 years ago
1
Classify is killed during EM round 0

#47 r-follador closed 11 months ago
1
EM not converging with default database

#46 aaguinal opened 3 years ago
1
Running Classify module then throw 'boost::wrapexcept<std::logic_error>' and 'core dump'

#45 yipukangda opened 3 years ago
2
Assertion error in EM

#44 pkonieczny closed 11 months ago
4
downloadRefSeq.pl fails with error message

#43 cpockrandt opened 4 years ago
0
Memory usage???

#42 Thomieh73 closed 3 years ago
1
Error when creating database

#41 LankyCyril opened 4 years ago
2
mapAgainstIndex frozen

#40 schorlton closed 11 months ago
1
Error: cannot open file 'plotIdentities_EM.R': No such file or directory

#39 tanushrin closed 11 months ago
2
ERROR, skch::validateInputFiles, Could not open test.fastq

#38 carthysgn closed 11 months ago
1
Make error

#37 gbdias closed 11 months ago
1
mapAgainstIndex

#36 Mattstorey closed 4 years ago
2
filterLowIdentityEntities.pl

#35 maolingfengZJU closed 4 years ago
1
Result in file 'classification_results.EM.contigCoverage' with an error

#34 tenlives opened 4 years ago
1
Error with classify command (boost-related?)

#33 apredeus opened 4 years ago
10
Dropbox download issue

#32 apredeus closed 11 months ago
2
Problems integrating MetaMaps with Boost

#31 ArnieBerg closed 4 years ago
4
Didn`t find th script named "filterLowIdentityEntities.pl"

#30 tenlives closed 4 years ago
1